Browse Element(s) Details


Os.50133.1.S1_at

Description gb:AK119926.1
DB_XREF= gi:37989549
TID=Os.50133.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-H04, full insert sequence.
FL= gb:AK119926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1444011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed
LOC_Os11g14430Os.8330.2.S1_a_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14430Os.8330.1.S1_x_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14440Os.50133.1.S1_at11/1111+8101334..8102798expressed protein
LOC_Os11g14450OsAffx.31069.1.S1_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14450OsAffx.31069.1.S1_x_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14460OsAffx.20387.1.S1_x_at1/1111+8110412..8118596retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g14470NANA11+8125514..8126172hAT family dimerisation domain containing protein
LOC_Os11g14480NANA11+8127130..8127888Ank repeat PF|00023 containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50133.1.S1_at--547--10131Chr11:8102229..8102253 (25 bp)
TATGCCCGGTGTCGGCGCAACAGTC
LOC_Os11g14440
Os.50133.1.S1_at--958--971Chr11:8102393..8102417 (25 bp)
AGGAGGCCACAGTTGCCGGTCCCTG
LOC_Os11g14440
Os.50133.1.S1_at--1089--7152Chr11:8102433..8102457 (25 bp)
GTCTCTCAGGTGCTGCCGACAATCA
LOC_Os11g14440
Os.50133.1.S1_at--354--5611Chr11:8102450..8102474 (25 bp)
GACAATCACCCGAGAAGACCCGATG
LOC_Os11g14440
Os.50133.1.S1_at--1133--5951Chr11:8102461..8102485 (25 bp)
GAGAAGACCCGATGACATGACCTGG
LOC_Os11g14440
Os.50133.1.S1_at--118--5671Chr11:8102474..8102498 (25 bp)
GACATGACCTGGGTGTGATGGCACC
LOC_Os11g14440
Os.50133.1.S1_at--904--5791Chr11:8102550..8102574 (25 bp)
GACGCCCATTTTGGGAATCTGCCTA
LOC_Os11g14440
Os.50133.1.S1_at--627--8211Chr11:8102563..8102587 (25 bp)
GGAATCTGCCTATCCTCCTAGGATA
LOC_Os11g14440
Os.50133.1.S1_at--999--5531Chr11:8102659..8102683 (25 bp)
GAAACAGGTCAATAGCTCTGTTCTA
LOC_Os11g14440
Os.50133.1.S1_at--759--8791Chr11:8102677..8102701 (25 bp)
TGTTCTATTGCTAGCTACTCCGTAC
LOC_Os11g14440
Os.50133.1.S1_at--305--3151Chr11:8102737..8102761 (25 bp)
AATTGATTAATCTCCCTGTTGGGTT
LOC_Os11g14440
Target Sequence 
TATGCCCGGTGTCGGCGCAACAGTCGCAGGGAGCAGCGGCGTGGAGGTCACGGGAGGTGGCATGGGGTCCGAAGGCGGCG
GCACGGGGTCCGCAAGTGACGGCATGATGGTCACAGGAGGCGAGGAGGCCGCAAGCGGCGAATCGACGATCACTGGGGGC
GGCGAGGAGGCCACAGTTGCCGGTCCCTGACCGTCTTCATTGCCGTCTCTCAGGTGCTGCCGACAATCACCCGAGAAGAC
CCGATGACATGACCTGGGTGTGATGGCACCCAGATCGTCACACCCTCGCATCACCCCAGCCCCGCCCTATCGCGCCCTCC
CGACGCCCATTTTGGGAATCTGCCTATCCTCCTAGGATAGGAGGAAGGGCACTGTGGAGAGGAGAAAGGGGAGATGGCGG
TGCCGGCATGCTGCTGCAGATGAGGGGCCAGAAACAGGTCAATAGCTCTGTTCTATTGCTAGCTACTCCGTACCTTGTTT
CTTTTTTTCTTTTACTTACTATATGACAAATTGATTAATCTCCCTGTTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis