Browse Element(s) Details


OsAffx.7109.1.S1_at

Description tigr:9639.m01358
TID=OsAffx.7109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1469011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14630OsAffx.7108.1.S1_at11/1111+8238108..8242668hypothetical protein
LOC_Os11g14640NANA11+8246820..8248165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14650Os.38764.1.S1_x_at5/1111+8248455..8257304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14660NANA11+8257832..8258492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14670NANA11+8262117..8263097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14680OsAffx.18924.2.S1_x_at7/1111+8263771..8264659hypothetical protein
LOC_Os11g14680OsAffx.19842.1.S1_at1/1111+8263771..8264659hypothetical protein
LOC_Os11g14690OsAffx.7109.1.S1_at11/1111+8266859..8267578hypothetical protein
LOC_Os11g14700NANA11+8278818..8279297hypothetical protein
LOC_Os11g14710NANA11+8289136..8291622hypothetical protein
LOC_Os11g14720NANA11+8292039..8293484hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7109.1.S1_at--662--8611Chr11:8267523..8267547 (25 bp)
TGGGATTGATCCACCGTCCCCTTGA
LOC_Os11g14690
OsAffx.7109.1.S1_at--1042--3951Chr11:8267469..8267493 (25 bp)
CGGTGCAGTTCGACCTTGAAGGTGT
LOC_Os11g14690
OsAffx.7109.1.S1_at--273--5031Chr11:8267465..8267489 (25 bp)
GCAGTTCGACCTTGAAGGTGTGACT
LOC_Os11g14690
OsAffx.7109.1.S1_at--84--5851Chr11:8267458..8267482 (25 bp)
GACCTTGAAGGTGTGACTGCATGCG
LOC_Os11g14690
OsAffx.7109.1.S1_at--155--1751Chr11:8267457..8267481 (25 bp)
ACCTTGAAGGTGTGACTGCATGCGG
LOC_Os11g14690
OsAffx.7109.1.S1_at--278--1811Chr11:8267443..8267467 (25 bp)
ACTGCATGCGGGAGGTCGGTAAGGT
LOC_Os11g14690
OsAffx.7109.1.S1_at--666--7191Chr11:8266940..8267453 (25 bp)
GTCGGTAAGGTGTTCAGTTGGCAAT
LOC_Os11g14690
OsAffx.7109.1.S1_at--750--9771Chr11:8266935..8266958 (24 bp)
TAAGGTGTTCAGTTGGCAATGGCGA
LOC_Os11g14690
OsAffx.7109.1.S1_at--1041--4511Chr11:8266899..8266923 (25 bp)
GCCGCACTGCCCTTAGGGTGTTTCT
LOC_Os11g14690
OsAffx.7109.1.S1_at--354--5111Chr11:8266896..8266920 (25 bp)
GCACTGCCCTTAGGGTGTTTCTACG
LOC_Os11g14690
OsAffx.7109.1.S1_at--786--9151Chr11:8266892..8266916 (25 bp)
TGCCCTTAGGGTGTTTCTACGGAAT
LOC_Os11g14690
Target Sequence 
TGGGATTGATCCACCGTCCCCTTGACCATGGCGGTGGCAACGGCAAGGGCGAGGCGGTGCAGTTCGACCTTGAAGGTGTG
ACTGCATGCGGGAGGTCGGTAAGGTGTTCAGTTGGCAATGGCGACGCTTGCGGCCGCCGCACTGCCCTTAGGGTGTTTCT
ACGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis