Browse Element(s) Details


OsAffx.7114.1.S1_at

Description tigr:9639.m01390
TID=OsAffx.7114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1502011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14970NANA11+8423526..8429681retrotransposon protein, putative, unclassified
LOC_Os11g14980OsAffx.30983.1.S1_at11/1111+8434134..8435882pentatricopeptide, putative
LOC_Os11g14990Os.49548.1.S1_at11/1111+8437543..8440405expressed protein
LOC_Os11g15000Os.52306.1.S1_at11/1111+8440752..8441695expressed protein
LOC_Os11g15010Os.50187.1.S1_at11/1111+8441959..8443906transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g15020OsAffx.7114.1.S1_at11/1111+8448152..8448676expressed protein
LOC_Os11g15030OsAffx.18857.1.S1_at11/1111+8451461..8454568SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15040Os.17356.1.A1_a_at11/1111+8461158..8463673Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os11g15050OsAffx.18858.1.S1_at11/1111+8467277..8468519hypothetical protein
LOC_Os11g15060Os.17356.1.A1_a_at1/1111+8472066..8474370SAM dependent carboxyl methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7114.1.S1_at--576--1631Chr11:8448617..8448641 (25 bp)
AGCGGTGTCTAGTGGCAGTGGCAAC
LOC_Os11g15020
OsAffx.7114.1.S1_at--808--3451Chr11:8448602..8448626 (25 bp)
CAGTGGCAACGGCATTCGAGGCGTT
LOC_Os11g15020
OsAffx.7114.1.S1_at--20--6371Chr11:8448554..8448578 (25 bp)
GATCCACGTCTGGATTTGGCAGGAT
LOC_Os11g15020
OsAffx.7114.1.S1_at--967--211Chr11:8448541..8448565 (25 bp)
ATTTGGCAGGATAGCGGCCGGCAGC
LOC_Os11g15020
OsAffx.7114.1.S1_at--856--851Chr11:8448429..8448453 (25 bp)
ATGGCATCGATGAGGCGAACCTGGC
LOC_Os11g15020
OsAffx.7114.1.S1_at--1029--3531Chr11:8448425..8448449 (25 bp)
CATCGATGAGGCGAACCTGGCCGCG
LOC_Os11g15020
OsAffx.7114.1.S1_at--1078--8351Chr11:8448398..8448422 (25 bp)
GGCGGTGGATCCAGTGCCTCGAGGA
LOC_Os11g15020
OsAffx.7114.1.S1_at--575--9151Chr11:8448384..8448408 (25 bp)
TGCCTCGAGGAGTTTTGGACCCCCG
LOC_Os11g15020
OsAffx.7114.1.S1_at--640--8271Chr11:8448314..8448338 (25 bp)
GGCTACCACGGTAGGCCGTCTGTGT
LOC_Os11g15020
OsAffx.7114.1.S1_at--39--4511Chr11:8448300..8448324 (25 bp)
GCCGTCTGTGTCGTCGGAGCTCGTC
LOC_Os11g15020
OsAffx.7114.1.S1_at--617--7491Chr11:8448210..8448234 (25 bp)
GTGGTGGCAACCGTCACCGTGGTCC
LOC_Os11g15020
Target Sequence 
AGCGGTGTCTAGTGGCAGTGGCAACGGCATTCGAGGCGTTGGCGGCGGCGGAGGAAACCGCCAGATCCACGTCTGGATTT
GGCAGGATAGCGGCCGGCAGCGGCGTTTAGTGGCGGGGATGGCGACGGCGGTGAGGACGGCGAGGGGATGTAGCCAGCGG
CGGTGTCTGGCGGCGGGGGTGGCGAGGGATGGCATCGATGAGGCGAACCTGGCCGCGCCGGCGGTGGATCCAGTGCCTCG
AGGAGTTTTGGACCCCCGGCGGTCGCGGCAGTGGTGGCGAGGAGTTCACGCGACGGCGGCGCGGGCTACCACGGTAGGCC
GTCTGTGTCGTCGGAGCTCGTCGAGGATAAGCAGGTGTGGGAGGGTGGCGAGATGGCAATGGGGATTGAAGGGCAGCGGC
GGCTGCGGTGGTGGCAACCGTCACCGTGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis