Browse Element(s) Details


OsAffx.7140.1.S1_at

Description tigr:9639.m01673
TID=OsAffx.7140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18120OsAffx.29410.1.S1_at9/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.13325.1.S1_at2/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_x_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18130OsAffx.18913.1.S1_at11/1111+10182071..10183029hypothetical protein
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed
LOC_Os11g18160OsAffx.7140.1.S1_at11/1111+10199208..10201463hypothetical protein
LOC_Os11g18160OsAffx.13906.1.S1_at1/1111+10199208..10201463hypothetical protein
LOC_Os11g18170Os.49459.1.S1_at9/1111+10208348..10210791phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os11g18194OsAffx.31037.1.S1_x_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.7141.1.S1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194Os.53034.1.A1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.18914.1.S1_x_at4/1111+10213730..10245275Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7140.1.S1_at--817--10291Chr11:10200480..10200504 (25 bp)
TTTCGAGCTCCGCATCAATGGCGAC
LOC_Os11g18160
OsAffx.7140.1.S1_at--405--4091Chr11:10200459..10200483 (25 bp)
CGACGAGGCAACGAGTCCTGTGCAG
LOC_Os11g18160
OsAffx.7140.1.S1_at--138--1071Chr11:10200292..10200316 (25 bp)
AGGGATGTCGCAGCTGGTCCTGACA
LOC_Os11g18160
OsAffx.7140.1.S1_at--102--1611Chr11:10200281..10200305 (25 bp)
AGCTGGTCCTGACACGACGATTTGC
LOC_Os11g18160
OsAffx.7140.1.S1_at--1150--1851Chr11:10200268..10200292 (25 bp)
ACGACGATTTGCTTCGAGCTTCTGC
LOC_Os11g18160
OsAffx.7140.1.S1_at--794--1951Chr11:10199563..10199705 (25 bp)
ACTGGAGCTCTATTGTGTTTGACCC
LOC_Os11g18160
OsAffx.7140.1.S1_at--933--6851Chr11:10199547..10199571 (25 bp)
GTTTGACCCACATTATAGCTCAGCA
LOC_Os11g18160
OsAffx.7140.1.S1_at--278--6132Chr11:10199324..10199348 (25 bp)
GAGTGGACTTATTCCTATTATATAC
LOC_Os11g18160
OsAffx.7140.1.S1_at--949--7691Chr11:10199277..10199301 (25 bp)
GGGTCATTTTCTCCACATCAGGTTT
LOC_Os11g18160
OsAffx.7140.1.S1_at--811--9211Chr11:10199266..10199290 (25 bp)
TCCACATCAGGTTTGCTCGAGTAGA
LOC_Os11g18160
OsAffx.7140.1.S1_at--39--4811Chr11:10199252..10199276 (25 bp)
GCTCGAGTAGAGCATTTCGCTGCCA
LOC_Os11g18160
Target Sequence 
TTTCGAGCTCCGCATCAATGGCGACGAGGCAACGAGTCCTGTGCAGGGGGTGGCAGCAAAGCGCTGGGTGGACGCGGCAG
CGGCGGCGGGCGGCGCCGAGGAGGGGATTGGAGGACGAGGGTGGCGGGGGTGGACGGCGGCGAGCGGTGGCGAAGGGATG
TCGCAGCCGGTCTAGGAAGAGGCGGCAGAGGGATGTCGCAGCTGGTCCTGACACGACGATTTGCTTCGAGCTTCTGCCGC
GCGGCGCCGTCACCGCGCGGTCCGAGGGCCCCGTGCCACCGCATGCAGAGGCCATCGCCTCCTCCTCCTCCTCCTTGAGC
CACTGGAGCTCTATTGTGTTTGACCCACATTATAGCTCAGCAATTAGATTAAAAAACCATCCAAGTGTGTTAACAAATTT
GAAAAACAACACCAAGGTGAGGGACGTGGAGTGGACTTATTCCTATTATATACAAAAGCTTAATAAGGGCTGCTGGGGTC
ATTTTCTCCACATCAGGTTTGCTCGAGTAGAGCATTTCGCTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis