Browse Element(s) Details


OsAffx.7183.1.S1_s_at

Description tigr:9639.m02127
TID=OsAffx.7183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=basic blue protein (cusacyanin) (plantacyanin) (cbp).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2414010/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24100Os.26886.3.S1_x_at4/1111+13199778..13201705transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24110OsAffx.18980.1.S1_at11/1111+13204969..13205787hypothetical protein
LOC_Os11g24120Os.49884.1.S1_at10/1111+13207013..13209717expressed protein
LOC_Os11g24130OsAffx.18981.1.S1_at8/1111+13218707..13219852hypothetical protein
LOC_Os11g24140OsAffx.7183.1.S1_s_at10/1111+13222917..13224383Plastocyanin-like domain containing protein, expressed
LOC_Os11g24150OsAffx.20387.1.S1_x_at1/1111+13228721..13234780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24160NANA11+13235940..13241490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24170OsAffx.18982.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24170Os.17696.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7183.1.S1_s_at--737--2551Chr11:13223097..13223121 (25 bp)
AACGGTTGGGACTTCTCTGTGTCGT
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--860--2051Chr11:13223107..13223131 (25 bp)
ACTTCTCTGTGTCGTTTGATAGCTG
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--1127--8651Chr11:13223114..13223138 (25 bp)
TGTGTCGTTTGATAGCTGGGCTGAT
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--941--8331Chr11:13223132..13223156 (25 bp)
GGCTGATGGAAAGGTCTTCGCTGCT
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--1000--5571Chr11:13223140..13223164 (25 bp)
GAAAGGTCTTCGCTGCTGGTGACAC
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--1039--4711NONE
GCTGGTGACACTCTTGTTTTCAACT
NONE
OsAffx.7183.1.S1_s_at--1068--10371Chr11:13223856..13223880 (25 bp)
TTTTCAACTACAAACCGGGCGCACA
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--820--2371Chr11:13223867..13223891 (25 bp)
AAACCGGGCGCACACAACGTGCTGG
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--83--7171Chr11:13224112..13224136 (25 bp)
GTCTCTGCAGCCTGAAGCAGCATAT
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--206--9751Chr11:13224177..13224201 (25 bp)
TAATTGTAGCCCTATGTACTGGAGT
LOC_Os11g24140
OsAffx.7183.1.S1_s_at--169--4311Chr11:13224187..13224211 (25 bp)
CCTATGTACTGGAGTGGCTGACACT
LOC_Os11g24140
Target Sequence 
AACGGTTGGGACTTCTCTGTGTCGTTTGATAGCTGGGCTGATGGAAAGGTCTTCGCTGCTGGTGACACTCTTGTTTTCAA
CTACAAACCGGGCGCACACAACGTGCTGGCCGTGGACGCGGCGACGTACAGGAGCTGCAAGGTGGGCAGCTCGGCGGACT
CGGTGGCGGCGGCGACGGGGACCGCGTCGTTCCTCCTCAAGAAGGGCGTCAACTACTACATCTGCGGCGTCCCCGGCCAC
TGCGCCGCCGGGATGAAACTCCGGGTCGTCGCCAACTGATGAAACTCCGGCGACAGATCAATCCCTTAATTAATTAAAAC
TATGTGGGTGTCTCTGCAGCCTGAAGCAGCATATAGCTTGCTCGGTTTAGGGATTGGTCGCGTATATATAGTTGTAATTG
TAGCCCTATGTACTGGAGTGGCTGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7183.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis