Browse Element(s) Details


OsAffx.719.1.S1_s_at

Description gb:NM_193338.1
DB_XREF= gi:34913759
GEN=OSJNBa0051H17.28
TID=OsAffx.719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0051H17.28 (OSJNBa0051H17.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g455408/11Protein kinase domain containing protein, expressed
LOC_Os01g365008/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45510OsAffx.2218.2.S1_s_at11/1111+27046748..27048718expressed protein
LOC_Os11g45520OsAffx.31493.1.S1_at10/1111+27054854..27056116hypothetical protein
LOC_Os11g45530OsAffx.19392.1.S1_at10/1111+27056481..27060656transposon protein, putative, unclassified
LOC_Os11g45540OsAffx.719.4.S1_at10/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45540OsAffx.719.1.S1_s_at8/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45550Os.39421.1.S1_at9/1111+27068232..27069221expressed protein
LOC_Os11g45550OsAffx.20967.1.S1_x_at1/1111+27068232..27069221expressed protein
LOC_Os11g45560OsAffx.31494.1.S1_at11/1111+27069869..27072475BTB/POZ domain containing protein
LOC_Os11g45570OsAffx.31495.1.S1_at11/1111+27075411..27075842hypothetical protein
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein
LOC_Os11g45590Os.17168.1.A1_at11/1111+27084173..27089421transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45600OsAffx.31497.1.S1_at11/1111+27090023..27091090rust resistance protein Rp1-dp8, putative
LOC_Os11g45610NANA11+27091497..27096307retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.719.1.S1_s_at--917--6312Chr11:27064536..27064560 (25 bp)
GATGAAACATGGCTTCAACTCGTAG
LOC_Os11g45540
OsAffx.719.1.S1_s_at--697--672Chr11:27064535..27064559 (25 bp)
ATGAAACATGGCTTCAACTCGTAGA
LOC_Os11g45540
OsAffx.719.1.S1_s_at--25--6292Chr11:27064469..27064493 (25 bp)
GATGTATTAACATTGCTTTGCTTTG
LOC_Os11g45540
OsAffx.719.1.S1_s_at--255--752Chr11:27064468..27064492 (25 bp)
ATGTATTAACATTGCTTTGCTTTGT
LOC_Os11g45540
OsAffx.719.1.S1_s_at--324--8772Chr11:27064467..27064491 (25 bp)
TGTATTAACATTGCTTTGCTTTGTG
LOC_Os11g45540
OsAffx.719.1.S1_s_at--1048--6872Chr11:27064466..27064490 (25 bp)
GTATTAACATTGCTTTGCTTTGTGT
LOC_Os11g45540
OsAffx.719.1.S1_s_at--943--10213Chr11:27064465..27064489 (25 bp)
TATTAACATTGCTTTGCTTTGTGTG
LOC_Os11g45540
OsAffx.719.1.S1_s_at--5--3692Chr11:27064454..27064478 (25 bp)
CTTTGCTTTGTGTGCAAGAGAATGC
LOC_Os11g45540
Target Sequence 
GATGAAACATGGCTTCAACTCGTAGATACATCATTAGTAATAGAGTCTCATACACCAGAGATGGCACGATGTATTAACAT
TGCTTTGCTTTGTGTGCAAGAGAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.719.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis