Browse Element(s) Details


OsAffx.7212.1.S1_at

Description tigr:9639.m02384
TID=OsAffx.7212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2672011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26670NANA11+14773754..14779883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26680OsAffx.31287.1.S1_at1/1111+14782818..14786348transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26690NANA11+14787007..14787324hypothetical protein
LOC_Os11g26700OsAffx.19421.1.S1_at11/1111+14789156..14792110hypothetical protein
LOC_Os11g26700OsAffx.18924.2.S1_x_at1/1111+14789156..14792110hypothetical protein
LOC_Os11g26710OsAffx.19030.1.S1_at11/1111+14794685..14795076hypothetical protein
LOC_Os11g26720OsAffx.7212.1.S1_at11/1111+14801716..14804775hypothetical protein
LOC_Os11g26720Os.53874.1.S1_at1/1111+14801716..14804775hypothetical protein
LOC_Os11g26730OsAffx.19031.1.S1_at11/1111+14816284..14817059hypothetical protein
LOC_Os11g26730OsAffx.23391.1.S1_at1/1111+14816284..14817059hypothetical protein
LOC_Os11g26750Os.9820.1.S1_at11/1111+14820022..14821260Dehydrin RAB 16D, putative, expressed
LOC_Os11g26760Os.53210.1.S1_at10/1111+14827503..14828391Dehydrin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7212.1.S1_at--401--9671Chr11:14804322..14804346 (25 bp)
TCACCCATATCATCGTCGATCTCGG
LOC_Os11g26720
OsAffx.7212.1.S1_at--148--4491Chr11:14804294..14804318 (25 bp)
GCCGGATTCCTTCGCTACTGTGCAA
LOC_Os11g26720
OsAffx.7212.1.S1_at--606--9911Chr11:14804279..14804303 (25 bp)
TACTGTGCAACCATGACTCCGGATT
LOC_Os11g26720
OsAffx.7212.1.S1_at--720--7911Chr11:14804259..14804283 (25 bp)
GGATTGGCCTCTTCCGTTTACCACG
LOC_Os11g26720
OsAffx.7212.1.S1_at--920--1812Chr11:14804212..14804236 (25 bp)
ACCCATGGATCTCCTTTCAGTGATG
LOC_Os11g26720
OsAffx.7212.1.S1_at--944--831Chr11:14804026..14804050 (25 bp)
ATGGAGGGAACTGACGCCTCTTGTC
LOC_Os11g26720
OsAffx.7212.1.S1_at--885--1631Chr11:14803973..14803997 (25 bp)
AGCGTTGGTCCAACAATCAGGAGGG
LOC_Os11g26720
OsAffx.7212.1.S1_at--1103--331Chr11:14803484..14803760 (25 bp)
ATAAATGAAGGCACCGTCAACTTCC
LOC_Os11g26720
OsAffx.7212.1.S1_at--536--10111Chr11:14803413..14803437 (25 bp)
TATGTCCGTGGATTCTGTTTTGGCC
LOC_Os11g26720
OsAffx.7212.1.S1_at--748--10231Chr11:14803395..14803419 (25 bp)
TTTGGCCTGTCTTGCTTCTGAAGCA
LOC_Os11g26720
OsAffx.7212.1.S1_at--1120--7831Chr11:14802184..14802208 (25 bp)
GGTACAGTGTTAATTATCTTTCTAA
LOC_Os11g26720
Target Sequence 
TCACCCATATCATCGTCGATCTCGGCTCGCCGGATTCCTTCGCTACTGTGCAACCATGACTCCGGATTGGCCTCTTCCGT
TTACCACGCTCCTCCTCCGCCTCGCTCAACACCCATGGATCTCCTTTCAGTGATGCAGTCACAAAGCATGGAGGGAACTG
ACGCCTCTTGTCACCACTCACCAACAACAGCAGCAGGAGAAGCGTTGGTCCAACAATCAGGAGGGCAGACAAAAAAGATA
AATGAAGGCACCGTCAACTTCCAATCAAGAGGATTGCCATTTAGTTGCAAAGATCATTGTGACACAATTATGTCCGTGGA
TTCTGTTTTGGCCTGTCTTGCTTCTGAAGCACTTGATTTGGAGAAAAAGCAATTGCAAAGCTTTGGAATGCAACAGCTTG
AGAGGTACAGTGTTAATTATCTTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis