Browse Element(s) Details


OsAffx.7253.1.S1_at

Description tigr:9639.m02718
TID=OsAffx.7253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3005011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30010NANA11+16950641..16952484NB-ARC domain containing protein
LOC_Os11g30020OsAffx.19542.3.S1_x_at4/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g30020Os.32727.1.S1_at1/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g30030OsAffx.31217.1.S1_at11/1111+16967881..16968544Esterase PIR7A, putative
LOC_Os11g30040OsAffx.19078.1.S1_at11/1111+16969668..16970509esterase PIR7B, putative
LOC_Os11g30040OsAffx.22604.1.S1_x_at2/1111+16969668..16970509esterase PIR7B, putative
LOC_Os11g30050OsAffx.7253.1.S1_at11/1111+16976719..16980538NB-ARC domain containing protein
LOC_Os11g30060OsAffx.7254.1.S1_at11/1111+16982135..16986830NB-ARC domain containing protein
LOC_Os11g30070NANA11+16992638..16995970transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30080NANA11+16997649..17000094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.47463.1.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.14491.2.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30100OsAffx.7255.1.S1_at10/1111+17003671..17004348hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7253.1.S1_at--100--3111Chr11:16977432..16977456 (25 bp)
AATATCCCTCTTGGTTGGGTGAGCC
LOC_Os11g30050
OsAffx.7253.1.S1_at--1068--6711Chr11:16977374..16977398 (25 bp)
GTTCTGTAAATCTGAGCGACTTCCA
LOC_Os11g30050
OsAffx.7253.1.S1_at--1026--8771Chr11:16977300..16977324 (25 bp)
TGTTTCTGCAACACATCCGACAGGA
LOC_Os11g30050
OsAffx.7253.1.S1_at--375--9731Chr11:16977252..16977276 (25 bp)
TCAAGGGCTTCCCAGCACTGAAGAA
LOC_Os11g30050
OsAffx.7253.1.S1_at--993--3151Chr11:16977222..16977246 (25 bp)
AATTCGTGCAGATGCCCGAGTGGTC
LOC_Os11g30050
OsAffx.7253.1.S1_at--195--8571Chr11:16977183..16977207 (25 bp)
TGGATGATGGTGCATTTCCGCGCTT
LOC_Os11g30050
OsAffx.7253.1.S1_at--339--4931Chr11:16977162..16977186 (25 bp)
GCTTGCACAGGCTTTCCATCAGATG
LOC_Os11g30050
OsAffx.7253.1.S1_at--336--6471Chr11:16977133..16977157 (25 bp)
GATAACATACTGTCTCTTCCTGTAG
LOC_Os11g30050
OsAffx.7253.1.S1_at--927--6591Chr11:16977073..16977097 (25 bp)
GATTGTCCCAATATCACTGCGATTC
LOC_Os11g30050
OsAffx.7253.1.S1_at--435--2951Chr11:16976843..16976867 (25 bp)
AAGGCCTGCCTTTGCTCAGGAAAAT
LOC_Os11g30050
OsAffx.7253.1.S1_at--729--9031Chr11:16976798..16976822 (25 bp)
TGCAGTACTGTCATGGGCTTTCCGG
LOC_Os11g30050
Target Sequence 
AATATCCCTCTTGGTTGGGTGAGCCTTCCTTCTCCAACTTGACAACAATAAAGTTCTTGTTCTGTAAATCTGAGCGACTT
CCAACGCTTGGTGAGCTACCGTCCCTCCAGTTTCTCCATGTCCGTGAAATGATGTTTCTGCAACACATCCGACAGGAGTT
CTGCAGCCATGGCCATGGTTTCAAGGGCTTCCCAGCACTGAAGAAACTGAAATTCGTGCAGATGCCCGAGTGGTCAGAGT
GGTCTGGGGTGGATGATGGTGCATTTCCGCGCTTGCACAGGCTTTCCATCAGATGTGCAGATAACATACTGTCTCTTCCT
GTAGCGCCCTTTCTGTCCTTGGTTTCTTTTCAAGTGACAGATTGTCCCAATATCACTGCGATTCCAGCATCGCCCAGCCT
ACGTCAACTACACATTTGTAGATCTCTTGAGCCACAAGGCCTGCCTTTGCTCAGGAAAATCAAGTTTAGCAGCGATAATC
TGCAGTACTGTCATGGGCTTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis