Browse Element(s) Details


OsAffx.7258.1.S1_at

Description tigr:9639.m02766
TID=OsAffx.7258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3057010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30546NANA11+17271477..17271995transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30552Os.14491.2.S1_x_at5/1111+17273413..17278368transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30552Os.47463.1.S1_x_at5/1111+17273413..17278368transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30560Os.7579.1.S1_at11/1111+17282414..17289933oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g30570OsAffx.7258.1.S1_at10/1111+17290352..17292471hypothetical protein
LOC_Os11g30590Os.40626.1.S1_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30590Os.40626.2.S1_x_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30600OsAffx.7259.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30600OsAffx.31230.1.S1_at11/1111+17314337..17317634hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7258.1.S1_at--306--551Chr11:17290504..17290528 (25 bp)
ATCCCCTTTCTCGTGGATGCGTTTG
LOC_Os11g30570
OsAffx.7258.1.S1_at--285--3671Chr11:17290499..17290523 (25 bp)
CTTTCTCGTGGATGCGTTTGGCGGT
LOC_Os11g30570
OsAffx.7258.1.S1_at--674--1311Chr11:17290457..17290481 (25 bp)
AGATGTGCCTGAGGACTGCCGTGCT
LOC_Os11g30570
OsAffx.7258.1.S1_at--493--7291Chr11:17290453..17290477 (25 bp)
GTGCCTGAGGACTGCCGTGCTATCA
LOC_Os11g30570
OsAffx.7258.1.S1_at--304--8891Chr11:17290448..17290472 (25 bp)
TGAGGACTGCCGTGCTATCACCGGT
LOC_Os11g30570
OsAffx.7258.1.S1_at--152--7331Chr11:17290437..17290461 (25 bp)
GTGCTATCACCGGTCACTGGTGGAG
LOC_Os11g30570
OsAffx.7258.1.S1_at--371--391Chr11:17290432..17290456 (25 bp)
ATCACCGGTCACTGGTGGAGGCATG
LOC_Os11g30570
OsAffx.7258.1.S1_at--281--831Chr11:17290410..17290434 (25 bp)
ATGGAGGGACCGAGGTGCCACCGCC
LOC_Os11g30570
OsAffx.7258.1.S1_at--1156--1791Chr11:17290391..17290415 (25 bp)
ACCGCCGACGTGGATGGTGACTGCA
LOC_Os11g30570
OsAffx.7258.1.S1_at--522--811Chr11:17290378..17290402 (25 bp)
ATGGTGACTGCATGGATGACGAGGA
LOC_Os11g30570
OsAffx.7258.1.S1_at--1059--7691Chr11:17289965..17289988 (24 bp)
GGGTCTAATGATATCTACAGACAGA
NONE
Target Sequence 
ATCCCCTTTCTCGTGGATGCGTTTGGCGGTGGGTGGCTAGAGGAGAGAGATGTGCCTGAGGACTGCCGTGCTATCACCGG
TCACTGGTGGAGGCATGGAGGGACCGAGGTGCCACCGCCGACGTGGATGGTGACTGCATGGATGACGAGGAGGAGCGGCG
GCGCCAGGGGTCTAATGATATCTACAGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis