Browse Element(s) Details


OsAffx.7294.1.S1_at

Description tigr:9639.m03131
TID=OsAffx.7294.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3487010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34830NANA11+19906539..19913611ABC1 family protein
LOC_Os11g34840NANA11+19915274..19917823expressed protein
LOC_Os11g34850Os.27616.1.S1_at10/1111+19918770..19922297Maf family protein, putative, expressed
LOC_Os11g34860Os.16466.1.S1_at11/1111+19924659..19930996ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os11g34870OsAffx.7294.1.S1_at10/1111+19932099..19935754expressed protein
LOC_Os11g34870OsAffx.19160.1.A1_at5/1111+19932099..19935754expressed protein
LOC_Os11g34880Os.54278.1.S1_x_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34880OsAffx.19161.1.S1_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34890OsAffx.31300.1.S1_at11/1111+19951723..19952303hypothetical protein
LOC_Os11g34900OsAffx.19162.1.S1_at11/1111+19953150..19953499hypothetical protein
LOC_Os11g34910Os.10263.1.S1_at11/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.45902.1.A1_x_at4/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.56372.1.S1_at1/1111+19954062..19959051expressed protein
LOC_Os11g34920Os.52499.1.S1_at11/1111+19959841..19963404stripe rust resistance protein Yr10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7294.1.S1_at--152--5071Chr11:19932431..19932455 (25 bp)
GCAGCGGGCGAAGTCCATGGCTCTC
LOC_Os11g34870
OsAffx.7294.1.S1_at--377--851Chr11:19932447..19932471 (25 bp)
ATGGCTCTCAACAGTGAGGGCCTCG
LOC_Os11g34870
OsAffx.7294.1.S1_at--379--8871NONE
TGAGGGCCTCGAGGGTCTTGTTCCA
NONE
OsAffx.7294.1.S1_at--295--9371Chr11:19933213..19933234 (22 bp)
TCGAGGGTCTTGTTCCACGGGCAAA
LOC_Os11g34870
OsAffx.7294.1.S1_at--377--4611Chr11:19933214..19933238 (25 bp)
GGGTCTTGTTCCACGGGCAAAGTTG
LOC_Os11g34870
OsAffx.7294.1.S1_at--621--9211Chr11:19933223..19933247 (25 bp)
TCCACGGGCAAAGTTGCTATTGTCA
LOC_Os11g34870
OsAffx.7294.1.S1_at--1025--7091Chr11:19933244..19933268 (25 bp)
GTCACTTGGCAGTACATTTTTTCTT
LOC_Os11g34870
OsAffx.7294.1.S1_at--899--3591Chr11:19933248..19933272 (25 bp)
CTTGGCAGTACATTTTTTCTTGGAT
LOC_Os11g34870
OsAffx.7294.1.S1_at--985--10351Chr11:19933261..19933285 (25 bp)
TTTTTCTTGGATTTGCCCCTTTGAT
LOC_Os11g34870
OsAffx.7294.1.S1_at--648--9171Chr11:19933274..19933298 (25 bp)
TGCCCCTTTGATTCTTGTTACAGTT
LOC_Os11g34870
OsAffx.7294.1.S1_at--507--6771Chr11:19933290..19933314 (25 bp)
GTTACAGTTTCTCTGTTTGCTGTTC
LOC_Os11g34870
Target Sequence 
GCAGCGGGCGAAGTCCATGGCTCTCAACAGTGAGGGCCTCGAGGGTCTTGTTCCACGGGCAAAGTTGCTATTGTCACTTG
GCAGTACATTTTTTCTTGGATTTGCCCCTTTGATTCTTGTTACAGTTTCTCTGTTTGCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis