Browse Element(s) Details


OsAffx.7299.1.S1_at

Description tigr:9639.m03169
TID=OsAffx.7299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC112513 Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3526011/11Protein kinase domain containing protein
LOC_Os06g207301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35200NANA11+20136350..20141312retrotransposon protein, putative, unclassified
LOC_Os11g35210OsAffx.19170.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35210OsAffx.7298.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35220Os.54257.1.S1_at11/1111+20149757..20152828Protein kinase domain containing protein, expressed
LOC_Os11g35230OsAffx.31305.1.S1_at11/1111+20157500..20157883hypothetical protein
LOC_Os11g35240OsAffx.5632.1.S1_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35240OsAffx.5632.1.S1_x_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35250Os.2987.3.S1_x_at2/1111+20161848..20162456transposon protein, putative, unclassified
LOC_Os11g35260OsAffx.7299.1.S1_at11/1111+20166289..20166966Protein kinase domain containing protein
LOC_Os11g35274OsAffx.19171.1.S1_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35274OsAffx.19171.1.S1_s_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7299.1.S1_at--749--3971Chr11:20166842..20166866 (25 bp)
CGGGCAACTATAGCATTCCCATTGG
LOC_Os11g35260
OsAffx.7299.1.S1_at--922--711Chr11:20166779..20166803 (25 bp)
ATGATTATGACCGTGATGTAGTTGC
LOC_Os11g35260
OsAffx.7299.1.S1_at--435--6051Chr11:20166748..20166772 (25 bp)
GAGATATATCCATACCGATTTGAGA
LOC_Os11g35260
OsAffx.7299.1.S1_at--820--6111Chr11:20166577..20166601 (25 bp)
GAGTGATATTTCCATCTCTTTGGAT
LOC_Os11g35260
OsAffx.7299.1.S1_at--960--31Chr11:20166547..20166571 (25 bp)
ATTGGGCATTGCTATCGGGTGCGCA
LOC_Os11g35260
OsAffx.7299.1.S1_at--201--10151Chr11:20166535..20166559 (25 bp)
TATCGGGTGCGCAGAAGCATTGAGC
LOC_Os11g35260
OsAffx.7299.1.S1_at--1151--4931Chr11:20166505..20166529 (25 bp)
GCATTCGATGCACTTATCAGTTGAT
LOC_Os11g35260
OsAffx.7299.1.S1_at--624--10411Chr11:20166400..20166424 (25 bp)
TTTTGGACTGTCAAGGCATCTCTCT
LOC_Os11g35260
OsAffx.7299.1.S1_at--262--4971Chr11:20166385..20166409 (25 bp)
GCATCTCTCTGGAGGCATTACTCGA
LOC_Os11g35260
OsAffx.7299.1.S1_at--441--6372Chr06:11942908..11943234 (25 bp)
GATCCTATATATCTTCACACTGGGC
LOC_Os06g20730
OsAffx.7299.1.S1_at--957--211Chr11:20166320..20166344 (25 bp)
ATATCTTCACACTGGGCGGATTACC
LOC_Os11g35260
Target Sequence 
CGGGCAACTATAGCATTCCCATTGGAAAAGGCGGGTTCGGAGAAGTCTTTAAAGGATTCATTGATGATTATGACCGTGAT
GTAGTTGCGGTGAAGAGATATATCCATACCGATTTGAGAAAGGAGTTCATGGAAGAAGTAAGCATTCATAGTAAAATCAA
CCATAAGAATGTAGTGAAGTTCATAGGTTATAGTACAGGGGAAAACACCCTAATGTTGGTAACTGAGTTTATCTCCAATG
GGAACCTTGAAGATGCACTTCACAAGAGTGATATTTCCATCTCTTTGGATACAAGATTGGGCATTGCTATCGGGTGCGCA
GAAGCATTGAGCTACATGCATTCGATGCACTTATCAGTTGATCTTGACAGCCTTGTATATCATGGTGATATTAAGCCAGC
AAACATACTTCTAAATGATAGTCTTACAGCAAAAGTATCTAATTTTGGACTGTCAAGGCATCTCTCTGGAGGCATTACTC
GATGTACAAATACTGTAAAAGTATGGATTACATGGATCCTATATATCTTCACACTGGGCGGATTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis