Browse Element(s) Details


OsAffx.7320.1.S1_at

Description tigr:9639.m03360
TID=OsAffx.7320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3716011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37130Os.14640.1.S1_at10/1111+21418836..21422022HCF106 precursor protein, putative, expressed
LOC_Os11g37140OsAffx.7328.2.S1_at10/1111+21424543..21426823hypothetical protein
LOC_Os11g37160OsAffx.7320.1.S1_at11/1111+21434605..21435723hypothetical protein
LOC_Os11g37170OsAffx.8201.1.S1_x_at1/1111+21443224..21449697retrotransposon protein, putative, unclassified
LOC_Os11g37180NANA11+21450297..21453338hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7320.1.S1_at--944--8651Chr11:21435098..21435122 (25 bp)
TGTGGAGATCCCGTTGACTTGTTAG
LOC_Os11g37160
OsAffx.7320.1.S1_at--431--6031Chr11:21435094..21435118 (25 bp)
GAGATCCCGTTGACTTGTTAGATGG
LOC_Os11g37160
OsAffx.7320.1.S1_at--235--5691Chr11:21435083..21435107 (25 bp)
GACTTGTTAGATGGGACAGCTATGG
LOC_Os11g37160
OsAffx.7320.1.S1_at--790--911Chr11:21434765..21435061 (25 bp)
AGGCAGTTCCTGTGGATCAAATCAA
LOC_Os11g37160
OsAffx.7320.1.S1_at--711--5031Chr11:21434763..21435059 (25 bp)
GCAGTTCCTGTGGATCAAATCAACT
LOC_Os11g37160
OsAffx.7320.1.S1_at--506--2633Chr11:13309753..13309772 (20 bp)
AACCTGAAGCTTTGGACCTACACTG
NONE
OsAffx.7320.1.S1_at--667--2811Chr11:21434702..21434726 (25 bp)
AAGTTAAGCAAATCTTCGAGGCCAT
LOC_Os11g37160
OsAffx.7320.1.S1_at--203--10631Chr11:21434671..21434695 (25 bp)
TTCGCATCAACAGATACTCATGATC
LOC_Os11g37160
OsAffx.7320.1.S1_at--793--6471Chr11:21434659..21434683 (25 bp)
GATACTCATGATCCAAGATAGGTCT
LOC_Os11g37160
OsAffx.7320.1.S1_at--506--6251Chr11:21434650..21434674 (25 bp)
GATCCAAGATAGGTCTGAAAGGTTG
LOC_Os11g37160
OsAffx.7320.1.S1_at--366--8911Chr11:21434635..21434659 (25 bp)
TGAAAGGTTGAAAGCTAACCTTCCA
LOC_Os11g37160
Target Sequence 
TGTGGAGATCCCGTTGACTTGTTAGATGGGACAGCTATGGTTTCTAGGTCATTCTATGATCAGGCAGTTCCTGTGGATCA
AATCAACTGGCATGCCCTGAACCTGAAGCTTTGGACCTACACTGAAGTTAAGCAAATCTTCGAGGCCATCGTGTTTTCGC
ATCAACAGATACTCATGATCCAAGATAGGTCTGAAAGGTTGAAAGCTAACCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis