Browse Element(s) Details


OsAffx.7340.2.S1_at

Description tigr:9639.m03483
TID=OsAffx.7340.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3839011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38340OsAffx.7338.1.S1_at11/1111+22207571..22210922hypothetical protein
LOC_Os11g38350NANA11+22211706..22213103retrotransposon protein, putative, unclassified
LOC_Os11g38360NANA11+22214002..22217899retrotransposon protein, putative, unclassified
LOC_Os11g38370OsAffx.32072.2.S1_x_at5/1111+22226290..22226544hypothetical protein
LOC_Os11g38370OsAffx.32072.1.S1_x_at4/1111+22226290..22226544hypothetical protein
LOC_Os11g38380OsAffx.7340.1.S1_at11/1111+22227878..22231599hypothetical protein
LOC_Os11g38390OsAffx.7340.2.S1_at11/1111+22234094..22236108hypothetical protein
LOC_Os11g38400OsAffx.31364.1.S1_at11/1111+22237414..22237797hypothetical protein
LOC_Os11g38410NANA11+22245684..22246118hypothetical protein
LOC_Os11g38420Os.20602.2.S1_x_at10/1111+22253727..22255907hAT family dimerisation domain containing protein
LOC_Os11g38430OsAffx.31366.1.S1_at11/1111+22258418..22258844hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7340.2.S1_at--448--371Chr11:22235072..22235096 (25 bp)
ATCGATCCAGAGATAACCCGGTCCT
LOC_Os11g38390
OsAffx.7340.2.S1_at--287--7771Chr11:22235091..22235503 (25 bp)
GGTCCTCATCACACCGGCGTACGAT
LOC_Os11g38390
OsAffx.7340.2.S1_at--599--351Chr11:22235570..22235644 (25 bp)
ATAAGAATCAAGGTGTCTCCAGGAC
LOC_Os11g38390
OsAffx.7340.2.S1_at--223--9731Chr11:22235630..22235651 (22 bp)
TCAAGGTGTCTCCAGGACAACCTCT
LOC_Os11g38390
OsAffx.7340.2.S1_at--81--10631Chr11:22235660..22235684 (25 bp)
TTCGACTACCACTCCAAGATCCGGA
LOC_Os11g38390
OsAffx.7340.2.S1_at--1100--1691Chr11:22235667..22235691 (25 bp)
ACCACTCCAAGATCCGGATCGACGG
LOC_Os11g38390
OsAffx.7340.2.S1_at--1054--7211Chr11:22235738..22235762 (25 bp)
GTCGAGGCCACCGTACAGCTGGATT
LOC_Os11g38390
OsAffx.7340.2.S1_at--174--7031Chr11:22235750..22235774 (25 bp)
GTACAGCTGGATTTCCGGCGGCTCC
LOC_Os11g38390
OsAffx.7340.2.S1_at--43--3991Chr11:22235881..22235905 (25 bp)
CGTGAGTTGGACGAGATCGTCGTCC
LOC_Os11g38390
OsAffx.7340.2.S1_at--591--10551Chr11:22236004..22236028 (25 bp)
TTCTTGTCAGCCAAGCATGACAGCG
LOC_Os11g38390
OsAffx.7340.2.S1_at--13--1711Chr11:22236012..22236036 (25 bp)
AGCCAAGCATGACAGCGAAGTGAAG
LOC_Os11g38390
Target Sequence 
ATCGATCCAGAGATAACCCGGTCCTCATCACACCGGCGTACGATTCACTGCCCCTGATGAGCCCAACGAGGGGCATGTCA
ATGGCGGAGGCCTGCTTGATCGAGACCGACATAAGAATCAAGGTGTCTCCAGGACAACCTCTGTTCCTCCTTCGACTACC
ACTCCAAGATCCGGATCGACGGCGAGCTCGGCGCCGTCCTCACCCACTCGATGCTCATCCACGACGCCGTCGAGGCCACC
GTACAGCTGGATTTCCGGCGGCTCCCCGCGGCGGCGGCGATTTCCGCGTGCGGATGACGGGCTACACCAGGGCTCGGCCG
TCGGACCACCACCACCACCCCGACAACACCTACGTGTTCGCCGGCGATGGCCGTGAGTTGGACGAGATCGTCGTCCGCGC
CGCCGGCGAGCTGGAGCACAGGTTCGTCGCCGCCGTGAGGCTGGGCGACACGCTGGAGCTGTCCTTCATGGAGGAAGGGC
GAGAGCCTCTGGCGTTCTTGTCAGCCAAGCATGACAGCGAAGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7340.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis