Browse Element(s) Details


OsAffx.7347.1.S1_at

Description tigr:9639.m03535
TID=OsAffx.7347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3888011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38850OsAffx.19241.1.S1_at11/1111+22618618..22621870Protein kinase domain containing protein
LOC_Os11g38860Os.46753.1.S1_at11/1111+22627166..22631595Methyltransferase, putative, expressed
LOC_Os11g38870Os.27243.1.S1_at11/1111+22631489..22636257Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g38880OsAffx.7347.1.S1_at11/1111+22639595..22640956hypothetical protein
LOC_Os11g38890NANA11+22647580..22653333retrotransposon protein, putative, unclassified
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7347.1.S1_at--213--2291Chr11:22639688..22639712 (25 bp)
AAATGACGCATTTTCAGGATGTTGC
LOC_Os11g38880
OsAffx.7347.1.S1_at--1019--9631Chr11:22639675..22639699 (25 bp)
TCAGGATGTTGCATTAGCATAGTAA
LOC_Os11g38880
OsAffx.7347.1.S1_at--15--7931Chr11:22639661..22639685 (25 bp)
TAGCATAGTAAGATTTGGGAACCCT
LOC_Os11g38880
OsAffx.7347.1.S1_at--135--4931Chr11:22639659..22639683 (25 bp)
GCATAGTAAGATTTGGGAACCCTGA
LOC_Os11g38880
OsAffx.7347.1.S1_at--750--6512Chr08:22512680..22512704 (25 bp)
GATTTGGGAACCCTGAGAAGTCCGA
NONE
OsAffx.7347.1.S1_at--642--12Chr08:22512681..22512705 (25 bp)
ATTTGGGAACCCTGAGAAGTCCGAG
NONE
OsAffx.7347.1.S1_at--774--3572Chr08:22512682..22512706 (25 bp)
TTTGGGAACCCTGAGAAGTCCGAGG
NONE
OsAffx.7347.1.S1_at--514--5432Chr08:22512687..22512708 (22 bp)
GAACCCTGAGAAGTCCGAGGGCAGC
NONE
OsAffx.7347.1.S1_at--561--2612Chr08:22512688..22512708 (21 bp)
AACCCTGAGAAGTCCGAGGGCAGCC
NONE
OsAffx.7347.1.S1_at--655--3831Chr11:22639638..22639662 (25 bp)
CTGAGAAGTCCGAGGGCAGCCGGGA
LOC_Os11g38880
OsAffx.7347.1.S1_at--644--51Chr11:22639632..22639656 (25 bp)
AGTCCGAGGGCAGCCGGGAGGTGGC
LOC_Os11g38880
Target Sequence 
AAATGACGCATTTTCAGGATGTTGCATTAGCATAGTAAGATTTGGGAACCCTGAGAAGTCCGAGGGCAGCCGGGAGGTGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis