Browse Element(s) Details


OsAffx.7351.1.S1_at

Description tigr:9639.m03564
TID=OsAffx.7351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=retroelement, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3915011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39120Os.56116.1.S1_at11/1111+22782621..22783474expressed protein
LOC_Os11g39130Os.10068.1.S1_at11/1111+22789730..22793140Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39140OsAffx.19246.1.S1_at9/1111+22793952..22797397TRNA synthetase, putative, expressed
LOC_Os11g39150OsAffx.7351.1.S1_at11/1111+22798773..22802188hypothetical protein
LOC_Os11g39150OsAffx.4334.1.S1_at1/1111+22798773..22802188hypothetical protein
LOC_Os11g39160Os.49419.1.S1_at4/1111+22804542..22812100NB-ARC domain containing protein
LOC_Os11g39170NANA11+22813491..22818491retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7351.1.S1_at--1096--1231Chr11:22800387..22800411 (25 bp)
AGTTGAGGCCAAGATCCTGGAGCAC
LOC_Os11g39150
OsAffx.7351.1.S1_at--684--1271Chr11:22800376..22800400 (25 bp)
AGATCCTGGAGCACCCTGACGAGAC
LOC_Os11g39150
OsAffx.7351.1.S1_at--989--8531Chr11:22800370..22800394 (25 bp)
TGGAGCACCCTGACGAGACCTCGGT
LOC_Os11g39150
OsAffx.7351.1.S1_at--354--7371Chr11:22800347..22800371 (25 bp)
GTGACATCTTCGCTGTTCACCCTGG
LOC_Os11g39150
OsAffx.7351.1.S1_at--199--10531Chr11:22800333..22800356 (24 bp)
TTCACCCTGGCCCAAGCGATGGAGC
LOC_Os11g39150
OsAffx.7351.1.S1_at--633--6231Chr11:22799277..22799296 (20 bp)
GATGGAGCTAGGTCGACGTTGCCAC
LOC_Os11g39150
OsAffx.7351.1.S1_at--52--4871Chr11:22799271..22799295 (25 bp)
GCTAGGTCGACGTTGCCACAAGCCT
LOC_Os11g39150
OsAffx.7351.1.S1_at--715--1731Chr11:22799242..22799266 (25 bp)
ACCTTCGCCAACCTTATAGTGTGGG
LOC_Os11g39150
OsAffx.7351.1.S1_at--36--4591Chr11:22798900..22798924 (25 bp)
GCGAACCGCTTGCACCTGACGAACT
LOC_Os11g39150
OsAffx.7351.1.S1_at--607--8931Chr11:22798884..22798908 (25 bp)
TGACGAACTCCCTCGCCGCGAGGAG
LOC_Os11g39150
OsAffx.7351.1.S1_at--604--6171Chr11:22798865..22798889 (25 bp)
GAGGAGCTTCCCCACGATCTCCAAT
LOC_Os11g39150
Target Sequence 
AGTTGAGGCCAAGATCCTGGAGCACCCTGACGAGACCTCGGTGACATCTTCGCTGTTCACCCTGGCCCAAGCGATGGAGC
TAGGTCGACGTTGCCACAAGCCTCCTCACCTTCGCCAACCTTATAGTGTGGGGGACGACGATGGCAACGGCGGGCGGAGG
GCGGCGGTTGGGATTGGAGAGGATGGCGTAGGCGTCGTGGACGAGGCTGAGGGCGACATCGGCGCCCGGGTGGGGGTTGG
TCTCCTGCCTGAGGAGGAGGGCGAGGCAGCGGTAGGCGTGGGAGACGGCAGCGTGGTCGGCCGGGTTGGTGGCCGAGGGA
AGCTGGATGACAGCGAGCGGGTCGGCGTGGACCAAGGGGAGGACCGACTGGGAAGCGAGGAGGACGTCGGTGACGGTGAG
GAGCTCGTCGGCACCAGGGAGGGGCGGGTCCACCTCCACCGCGCGCTCTGCGAACCGCTTGCACCTGACGAACTCCCTCG
CCGCGAGGAGCTTCCCCACGATCTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis