Browse Element(s) Details


OsAffx.7374.1.S1_at

Description tigr:9639.m03795
TID=OsAffx.7374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4131011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41260OsAffx.31424.1.S1_x_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260OsAffx.31424.1.S1_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260Os.24000.1.S1_at4/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41270OsAffx.29307.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41270OsAffx.16528.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41280OsAffx.20387.1.S1_x_at1/1111+24241906..24247931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g41290Os.55095.1.S1_at11/1111+24249175..24250275BTB/POZ domain containing protein, expressed
LOC_Os11g41300OsAffx.7373.1.S1_x_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.7373.1.S1_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.31424.1.S1_x_at2/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.7374.1.S1_at11/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.31424.1.S1_x_at1/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41320OsAffx.31426.1.S1_at10/1111+24278979..24280090hypothetical protein
LOC_Os11g41330OsAffx.31427.1.S1_at11/1111+24283560..24283802hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7374.1.S1_at--610--8971Chr11:24260128..24260152 (25 bp)
TGAAGGTCCCCGTGTTTGCCGCGCT
LOC_Os11g41310
OsAffx.7374.1.S1_at--1109--1851Chr11:24260197..24260221 (25 bp)
ACGAGCGCACGGTGATTATGGCGCC
LOC_Os11g41310
OsAffx.7374.1.S1_at--76--3351Chr11:24260204..24260228 (25 bp)
CACGGTGATTATGGCGCCGCACCTT
LOC_Os11g41310
OsAffx.7374.1.S1_at--825--7831Chr11:24260245..24260269 (25 bp)
GGTACGACATGGACAGGCTAGCTGA
LOC_Os11g41310
OsAffx.7374.1.S1_at--337--8011Chr11:24260367..24260391 (25 bp)
GGAGGCCATCTTGAGGTTCCTCGTC
LOC_Os11g41310
OsAffx.7374.1.S1_at--774--4431Chr11:24260371..24260395 (25 bp)
GCCATCTTGAGGTTCCTCGTCGTGT
LOC_Os11g41310
OsAffx.7374.1.S1_at--555--4191Chr11:24260398..24260422 (25 bp)
CCGCCGGAGAAGTTGAAGACGGTCA
LOC_Os11g41310
OsAffx.7374.1.S1_at--333--5891Chr11:24260427..24260451 (25 bp)
GAGCGAGGAGTACCAACATGTGATC
LOC_Os11g41310
OsAffx.7374.1.S1_at--844--8031Chr11:24260433..24260457 (25 bp)
GGAGTACCAACATGTGATCACGGAT
LOC_Os11g41310
OsAffx.7374.1.S1_at--159--791Chr11:24260444..24260468 (25 bp)
ATGTGATCACGGATTTCCCCTCCAT
LOC_Os11g41310
OsAffx.7374.1.S1_at--422--631Chr11:24260491..24260515 (25 bp)
ATGCTCGCCGCAAATTCGGCTTAGC
LOC_Os11g41310
Target Sequence 
TGAAGGTCCCCGTGTTTGCCGCGCTGCTCTACTTCGTCTACACCGACGAGCTGCCGGAGATGGAGGACGACGAGCGCACG
GTGATTATGGCGCCGCACCTTCTCGTCCCGGCGGACAGGTACGACATGGACAGGCTAGCTGAAGAAGGTGTGCGAGGACA
AGATGGTGAGGCACCTCGACGTCGGCACGGTGGCGACGTCGCTGGCGTTGGCCGAGCTCCATGGCTGCCCGCGGCTCAAG
GAGGCCATCTTGAGGTTCCTCGTCGTGTCGCCGCCGGAGAAGTTGAAGACGGTCATGGCGAGCGAGGAGTACCAACATGT
GATCACGGATTTCCCCTCCATAGCCACGGAGATTGTTCTTGCCATGCTCGCCGCAAATTCGGCTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis