Browse Element(s) Details


OsAffx.7415.1.S1_at

Description tigr:9639.m04164
TID=OsAffx.7415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4482011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44770NANA11+26587236..26593178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44780NANA11+26594524..26598066retrotransposon protein, putative, unclassified
LOC_Os11g44790OsAffx.31478.1.S1_at7/1111+26598839..26601742EAP30 family protein
LOC_Os11g44800Os.49151.1.S1_at11/1111+26605149..26606026expressed protein
LOC_Os11g44810Os.12735.1.S1_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44810Os.12735.1.S1_s_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44820OsAffx.7415.1.S1_at11/1111+26616130..26616969expressed protein
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein
LOC_Os11g44850OsAffx.31480.1.S1_at11/1111+26637773..26638612hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7415.1.S1_at--1056--7751Chr11:26616444..26616468 (25 bp)
GGTGAACTCCGAGATCGACCGGTGT
LOC_Os11g44820
OsAffx.7415.1.S1_at--510--9491Chr11:26616503..26616527 (25 bp)
TCTCCACCATTGATCACAAGCTCAA
LOC_Os11g44820
OsAffx.7415.1.S1_at--316--4491Chr11:26616582..26616606 (25 bp)
GCCGGTGAAGTGCAGTCACGATCAT
LOC_Os11g44820
OsAffx.7415.1.S1_at--237--1891Chr11:26616599..26616623 (25 bp)
ACGATCATGATCAGGATGACGGCGA
LOC_Os11g44820
OsAffx.7415.1.S1_at--248--5291Chr11:26616657..26616681 (25 bp)
GAATGGCGAGCTTATCTGCTTCGGC
LOC_Os11g44820
OsAffx.7415.1.S1_at--1154--8271Chr11:26616765..26616789 (25 bp)
GGCATACATGCACTACCATCTGTCG
LOC_Os11g44820
OsAffx.7415.1.S1_at--1071--4471Chr11:26616804..26616828 (25 bp)
GCCGTGTTACGGATACCACTTGCAT
LOC_Os11g44820
OsAffx.7415.1.S1_at--512--9931Chr11:26616811..26616835 (25 bp)
TACGGATACCACTTGCATTATTGCC
LOC_Os11g44820
OsAffx.7415.1.S1_at--1073--9051Chr11:26616824..26616848 (25 bp)
TGCATTATTGCCACTGCACCCATGG
LOC_Os11g44820
OsAffx.7415.1.S1_at--600--1851Chr11:26616899..26616923 (25 bp)
ACGACAGCGCTGACGTCAGGCTCCG
LOC_Os11g44820
OsAffx.7415.1.S1_at--637--3491Chr11:26616915..26616939 (25 bp)
CAGGCTCCGGCATATGTTCAGCGAT
LOC_Os11g44820
Target Sequence 
GGTGAACTCCGAGATCGACCGGTGTCTCCTCGACCTCAGCCTCTCCAGCCTCGCCCTCGTCTCCACCATTGATCACAAGC
TCAACGCCGCCGCCGCCGCCGGTGAACGGAACACCGTCGAGGTCGTCGCGCCGCCCCCGCCGGTGAAGTGCAGTCACGAT
CATGATCAGGATGACGGCGAGGACAAGATGGCGGCCGGCGGCGCGGCTGAGAAGAATGGCGAGCTTATCTGCTTCGGCGG
CGAGCAAGACGGCAAGGCTGAGACGGACGCCGGCGAGGTCACCACCACCACCACCACCATCGGTGTGCCGGCGGCCACGG
CGGCATACATGCACTACCATCTGTCGCCGCCGCCGCCGCCGCCGTGTTACGGATACCACTTGCATTATTGCCACTGCACC
CATGGCCACTGTCACTGCGCCGGCGGCCGCCACTACTCGCCGTCGTACTACTCCGACGACAGCGCTGACGTCAGGCTCCG
GCATATGTTCAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis