Browse Element(s) Details


OsAffx.7447.1.S1_at

Description tigr:9639.m04487
TID=OsAffx.7447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4796011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47940NANA11+28355908..28359106hypothetical protein
LOC_Os11g47944NANA11+28360913..28361757Thaumatin family protein
LOC_Os11g47950OsAffx.7446.1.S1_at10/1111+28363415..28365589Cyclin, N-terminal domain containing protein
LOC_Os11g47960OsAffx.7447.1.S1_at11/1111+28374523..28374975hypothetical protein
LOC_Os11g47970Os.11573.7.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A2_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A1_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.5.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7447.1.S1_at--304--9671Chr11:28374575..28374599 (25 bp)
TCAGCGTCACCTCTTCCACCGATTC
LOC_Os11g47960
OsAffx.7447.1.S1_at--377--10551Chr11:28374604..28374922 (25 bp)
TTCTTTCTTTCATGCTGTAAACCGT
LOC_Os11g47960
OsAffx.7447.1.S1_at--401--9551Chr11:28374605..28374923 (25 bp)
TCTTTCTTTCATGCTGTAAACCGTC
LOC_Os11g47960
OsAffx.7447.1.S1_at--785--10552Chr11:28374608..28374926 (25 bp)
TTCTTTCATGCTGTAAACCGTCTTA
LOC_Os11g47960
OsAffx.7447.1.S1_at--764--9551Chr11:28374609..28374927 (25 bp)
TCTTTCATGCTGTAAACCGTCTTAC
LOC_Os11g47960
OsAffx.7447.1.S1_at--426--3671Chr11:28374610..28374928 (25 bp)
CTTTCATGCTGTAAACCGTCTTACA
LOC_Os11g47960
OsAffx.7447.1.S1_at--1060--10511Chr11:28374612..28374930 (25 bp)
TTCATGCTGTAAACCGTCTTACAGT
LOC_Os11g47960
OsAffx.7447.1.S1_at--268--7051Chr11:28374914..28374938 (25 bp)
GTAAACCGTCTTACAGTATTGTTCT
LOC_Os11g47960
OsAffx.7447.1.S1_at--793--9811Chr11:28374915..28374939 (25 bp)
TAAACCGTCTTACAGTATTGTTCTA
LOC_Os11g47960
OsAffx.7447.1.S1_at--978--2611Chr11:28374917..28374941 (25 bp)
AACCGTCTTACAGTATTGTTCTAAG
LOC_Os11g47960
OsAffx.7447.1.S1_at--280--4251Chr11:28374919..28374943 (25 bp)
CCGTCTTACAGTATTGTTCTAAGAA
LOC_Os11g47960
Target Sequence 
TCAGCGTCACCTCTTCCACCGATTCCCCTTTCTTTCTTTCATGCTGTAAACCGTCTTACAGTATTGTTCTAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis