Browse Element(s) Details


OsAffx.7455.1.S1_at

Description tigr:9640.m00063
TID=OsAffx.7455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0163011/11hypothetical protein
LOC_Os09g180801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01590Os.27152.1.A1_at11/1112+354612..358271expressed protein
LOC_Os12g01600NANA12+363239..364726retrotransposon protein, putative, unclassified
LOC_Os12g01610NANA12+365357..365983retrotransposon protein, putative, unclassified
LOC_Os12g01620Os.6358.1.S1_at11/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_a_at9/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_x_at5/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.4.S1_x_at4/1112+373636..378324expressed protein
LOC_Os12g01620OsAffx.28618.1.S1_at1/1112+373636..378324expressed protein
LOC_Os12g01630OsAffx.7455.1.S1_at11/1112+379395..379742hypothetical protein
LOC_Os12g01640Os.47463.1.S1_x_at6/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01640Os.14491.2.S1_x_at4/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01650NANA12+389873..393204transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01660NANA12+399407..400441retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7455.1.S1_at--717--9571Chr12:379434..379458 (25 bp)
TCTTCTCCTTCGTGGGCTGCCGCAG
LOC_Os12g01630
OsAffx.7455.1.S1_at--936--4771Chr12:379449..379473 (25 bp)
GCTGCCGCAGTGCTTGGCTCCTTAG
LOC_Os12g01630
OsAffx.7455.1.S1_at--393--1131Chr12:379457..379481 (25 bp)
AGTGCTTGGCTCCTTAGTGGCGCTC
LOC_Os12g01630
OsAffx.7455.1.S1_at--835--10431Chr12:379470..379494 (25 bp)
TTAGTGGCGCTCGAGGCCGCAAAGC
LOC_Os12g01630
OsAffx.7455.1.S1_at--1140--4791Chr12:379478..379502 (25 bp)
GCTCGAGGCCGCAAAGCGGCAGATC
LOC_Os12g01630
OsAffx.7455.1.S1_at--7--2691Chr12:379491..379515 (25 bp)
AAGCGGCAGATCGAAGCGGCTTCGT
LOC_Os12g01630
OsAffx.7455.1.S1_at--505--4271Chr12:379547..379571 (25 bp)
CCTCTCCACTACTGTTGGTCAAGGG
LOC_Os12g01630
OsAffx.7455.1.S1_at--372--7552Chr12:379596..379620 (25 bp)
GTGGCCGAGGGCGATTTTGGGAGTG
LOC_Os12g01630
OsAffx.7455.1.S1_at--160--7611Chr12:379623..379647 (25 bp)
GGGCAAACTCATGGTCGGAGGACAA
LOC_Os12g01630
OsAffx.7455.1.S1_at--1000--9611Chr12:379631..379655 (25 bp)
TCATGGTCGGAGGACAACTGTTGAC
LOC_Os12g01630
OsAffx.7455.1.S1_at--821--8011Chr12:379639..379663 (25 bp)
GGAGGACAACTGTTGACGGAAAACA
LOC_Os12g01630
Target Sequence 
TCTTCTCCTTCGTGGGCTGCCGCAGTGCTTGGCTCCTTAGTGGCGCTCGAGGCCGCAAAGCGGCAGATCGAAGCGGCTTC
GTCCCCGTCTTCCTCGCCTCTCCACTCCCCTGCCCTCTCCACTACTGTTGGTCAAGGGGCTCCCGGCGGCGGCGCGGAGT
GGGTGGCCGAGGGCGATTTTGGGAGTGGGGGGCAAACTCATGGTCGGAGGACAACTGTTGACGGAAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis