Browse Element(s) Details


OsAffx.7465.1.S1_at

Description tigr:9640.m00193
TID=OsAffx.7465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0285011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02830Os.34563.1.S1_at4/1112+1011301..1015757SNF7 family protein, expressed
LOC_Os12g02840Os.53465.1.S1_at11/1112+1017201..1020176Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g02850OsAffx.7465.1.S1_at11/1112+1036187..1036547hypothetical protein
LOC_Os12g02860NANA12+1039963..1041087retrotransposon protein, putative, unclassified
LOC_Os12g02870Os.47623.1.A1_at2/1112+1042559..1046052GRAS family transcription factor containing protein, expressed
LOC_Os12g02880OsAffx.19459.1.S1_at9/1112+1051853..1052807hypothetical protein
LOC_Os12g02890OsAffx.7466.1.S1_at11/1112+1059932..1060273hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7465.1.S1_at--747--5652Chr12:1036484..1036508 (25 bp)
GACAGTGCCTACGAATGGAGGCCAT
LOC_Os12g02850
OsAffx.7465.1.S1_at--1044--7271Chr12:1036480..1036504 (25 bp)
GTGCCTACGAATGGAGGCCATTGCA
LOC_Os12g02850
OsAffx.7465.1.S1_at--235--8011Chr12:1036468..1036492 (25 bp)
GGAGGCCATTGCAAATGTCACTTGC
LOC_Os12g02850
OsAffx.7465.1.S1_at--192--8411Chr12:1036465..1036489 (25 bp)
GGCCATTGCAAATGTCACTTGCGGA
LOC_Os12g02850
OsAffx.7465.1.S1_at--794--3292Chr12:1036457..1036481 (25 bp)
CAAATGTCACTTGCGGAGGATGCGA
LOC_Os12g02850
OsAffx.7465.1.S1_at--555--7092Chr12:1036452..1036476 (25 bp)
GTCACTTGCGGAGGATGCGATGGAC
LOC_Os12g02850
OsAffx.7465.1.S1_at--946--1872Chr12:1036429..1036453 (25 bp)
ACGATGCCAGGGTAGAGACCGGCAT
LOC_Os12g02850
OsAffx.7465.1.S1_at--107--9212Chr12:1036425..1036449 (25 bp)
TGCCAGGGTAGAGACCGGCATAGCT
LOC_Os12g02850
OsAffx.7465.1.S1_at--925--1352Chr12:1036416..1036440 (25 bp)
AGAGACCGGCATAGCTGGTGATGCA
LOC_Os12g02850
OsAffx.7465.1.S1_at--1037--4952Chr12:1036413..1036432 (20 bp)
GCATAGCTGGTGATGCAGGTCCAAA
LOC_Os12g02850
OsAffx.7465.1.S1_at--1014--9972Chr04:8870836..8871135 (25 bp)
TAGCTGGTGATGCAGGTCCAAAACT
NONE
Target Sequence 
GACAGTGCCTACGAATGGAGGCCATTGCAAATGTCACTTGCGGAGGATGCGATGGACGATGCCAGGGTAGAGACCGGCAT
AGCTGGTGATGCAGGTCCAAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis