Browse Element(s) Details


OsAffx.7466.1.S1_at

Description tigr:9640.m00197
TID=OsAffx.7466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02850OsAffx.7465.1.S1_at11/1112+1036187..1036547hypothetical protein
LOC_Os12g02860NANA12+1039963..1041087retrotransposon protein, putative, unclassified
LOC_Os12g02870Os.47623.1.A1_at2/1112+1042559..1046052GRAS family transcription factor containing protein, expressed
LOC_Os12g02880OsAffx.19459.1.S1_at9/1112+1051853..1052807hypothetical protein
LOC_Os12g02890OsAffx.7466.1.S1_at11/1112+1059932..1060273hypothetical protein
LOC_Os12g02900OsAffx.18648.1.S1_at1/1112+1062020..1067900retrotransposon protein, putative, unclassified
LOC_Os12g02910Os.24025.1.S1_s_at11/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02910Os.57150.1.S1_at8/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02920OsAffx.31556.1.S1_at11/1112+1080583..1081152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7466.1.S1_at--445--951Chr12:1060041..1060065 (25 bp)
AGGAACAGGTGGAGCATCTGCTATC
LOC_Os12g02890
OsAffx.7466.1.S1_at--778--471Chr12:1060056..1060080 (25 bp)
ATCTGCTATCGTTCGTGACCATGGA
LOC_Os12g02890
OsAffx.7466.1.S1_at--526--831Chr12:1060076..1060100 (25 bp)
ATGGAGCCGATTCCTCTTCCGGTGG
LOC_Os12g02890
OsAffx.7466.1.S1_at--252--91Chr12:1060085..1060109 (25 bp)
ATTCCTCTTCCGGTGGTCTCTGCAG
LOC_Os12g02890
OsAffx.7466.1.S1_at--377--9051Chr12:1060105..1060129 (25 bp)
TGCAGACTCTGACGGCAATCCCAAC
LOC_Os12g02890
OsAffx.7466.1.S1_at--1079--3031Chr12:1060121..1060145 (25 bp)
AATCCCAACTCGTTGCGCAACAGGA
LOC_Os12g02890
OsAffx.7466.1.S1_at--923--3771Chr12:1060129..1060153 (25 bp)
CTCGTTGCGCAACAGGATGGACCGA
LOC_Os12g02890
OsAffx.7466.1.S1_at--682--991Chr12:1060142..1060166 (25 bp)
AGGATGGACCGACTCCTCATCAGGG
LOC_Os12g02890
OsAffx.7466.1.S1_at--925--9591Chr12:1060158..1060182 (25 bp)
TCATCAGGGCCATTAACCGTGTCAA
LOC_Os12g02890
OsAffx.7466.1.S1_at--588--3971Chr12:1060175..1060199 (25 bp)
CGTGTCAACACCAATTCTCAAGTCA
LOC_Os12g02890
OsAffx.7466.1.S1_at--117--10571Chr12:1060189..1060213 (25 bp)
TTCTCAAGTCATCCGCCAGATGCAG
LOC_Os12g02890
Target Sequence 
AGGAACAGGTGGAGCATCTGCTATCGTTCGTGACCATGGAGCCGATTCCTCTTCCGGTGGTCTCTGCAGACTCTGACGGC
AATCCCAACTCGTTGCGCAACAGGATGGACCGACTCCTCATCAGGGCCATTAACCGTGTCAACACCAATTCTCAAGTCAT
CCGCCAGATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis