Browse Element(s) Details


OsAffx.7514.1.S1_at

Description tigr:9640.m00676
TID=OsAffx.7514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g074709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07450Os.11721.1.S1_at11/1112+3671806..3678298transducin family protein, putative, expressed
LOC_Os12g07460OsAffx.19532.1.S1_at11/1112+3681711..3682528hypothetical protein
LOC_Os12g07470OsAffx.7514.1.S1_at9/1112+3695019..3698086hypothetical protein
LOC_Os12g07480OsAffx.31633.1.S1_s_at11/1112+3708751..3710537TCP family transcription factor containing protein, expressed
LOC_Os12g07490OsAffx.7515.1.S1_s_at11/1112+3717759..3719242Sec61beta family protein, expressed
LOC_Os12g07500Os.50888.1.S1_at11/1112+3722654..3725841expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7514.1.S1_at--439--6231NONE
GATGGCGATGGAGCAATCAAATACA
NONE
OsAffx.7514.1.S1_at--1099--331Chr12:3697276..3697300 (25 bp)
ATACAAAAATCATGACTCTAGCCCC
LOC_Os12g07470
OsAffx.7514.1.S1_at--999--5691Chr12:3697289..3697313 (25 bp)
GACTCTAGCCCCCAACAAGTATTTA
LOC_Os12g07470
OsAffx.7514.1.S1_at--216--3231Chr12:3697304..3697328 (25 bp)
CAAGTATTTACAACAGATTCTGTGA
LOC_Os12g07470
OsAffx.7514.1.S1_at--1036--6571Chr12:3697319..3697343 (25 bp)
GATTCTGTGATACTTACCATCTCAA
LOC_Os12g07470
OsAffx.7514.1.S1_at--198--7411Chr12:3697325..3697349 (25 bp)
GTGATACTTACCATCTCAAATATTA
LOC_Os12g07470
OsAffx.7514.1.S1_at--410--2251Chr12:3697342..3697366 (25 bp)
AAATATTAATGACGACCTCACCTGT
LOC_Os12g07470
OsAffx.7514.1.S1_at--128--2991Chr12:3697349..3697373 (25 bp)
AATGACGACCTCACCTGTCGAAAAG
LOC_Os12g07470
OsAffx.7514.1.S1_at--1063--3731NONE
CTCACCTGTCGAAAAGGAGGACCAG
NONE
OsAffx.7514.1.S1_at--840--9911Chr12:3697996..3698020 (25 bp)
TACTGCTAGCTCGATCCCTGAATTT
LOC_Os12g07470
OsAffx.7514.1.S1_at--1033--1691Chr12:3698028..3698052 (25 bp)
AGCCACCAGGTGAAACGCGACATGA
LOC_Os12g07470
Target Sequence 
GATGGCGATGGAGCAATCAAATACAAAAATCATGACTCTAGCCCCCAACAAGTATTTACAACAGATTCTGTGATACTTAC
CATCTCAAATATTAATGACGACCTCACCTGTCGAAAAGGAGGACCAGGTGCTACTGCTAGCTCGATCCCTGAATTTCCCA
CCCAGCCACCAGGTGAAACGCGACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis