Browse Element(s) Details


OsAffx.7523.1.S1_at

Description tigr:9640.m00771
TID=OsAffx.7523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0836011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08320Os.46012.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified
LOC_Os12g08320OsAffx.28492.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified
LOC_Os12g08330OsAffx.20517.2.S1_x_at1/1112+4241568..4245301retrotransposon protein, putative, unclassified
LOC_Os12g08330OsAffx.12243.1.S1_at1/1112+4241568..4245301retrotransposon protein, putative, unclassified
LOC_Os12g08340OsAffx.19553.1.S1_at11/1112+4245714..4246500hypothetical protein
LOC_Os12g08350OsAffx.31644.1.S1_at10/1112+4248171..4248985hypothetical protein
LOC_Os12g08360OsAffx.7523.1.S1_at11/1112+4251912..4254122hypothetical protein
LOC_Os12g08370Os.23706.1.A1_x_at1/1112+4258770..4260062retrotransposon protein, putative, unclassified
LOC_Os12g08380NANA12+4261592..4262206hypothetical protein
LOC_Os12g08390NANA12+4263094..4263517hypothetical protein
LOC_Os12g08400NANA12+4270171..4270719hypothetical protein
LOC_Os12g08410NANA12+4271361..4272854Zinc knuckle family protein
LOC_Os12g08420OsAffx.12179.1.S1_at2/1112+4278154..4279899transposon protein, putative, unclassified
LOC_Os12g08420OsAffx.12179.1.S1_x_at1/1112+4278154..4279899transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7523.1.S1_at--1014--5891Chr12:4253574..4253598 (25 bp)
GAGCTCTCCAAGCTGTTTGGCGCCG
LOC_Os12g08360
OsAffx.7523.1.S1_at--203--711Chr12:4253722..4253746 (25 bp)
ATGAGGTCCACGACGAGCGGCTGCT
LOC_Os12g08360
OsAffx.7523.1.S1_at--611--5531Chr12:4253785..4253809 (25 bp)
GAAACATAGGTTGCCGCCGCTCCAA
LOC_Os12g08360
OsAffx.7523.1.S1_at--719--731Chr12:4253817..4253841 (25 bp)
ATGTTCGCCAGCTTGCGAGAGTTCA
LOC_Os12g08360
OsAffx.7523.1.S1_at--493--9131Chr12:4253830..4253854 (25 bp)
TGCGAGAGTTCATGCCGGCCGACGA
LOC_Os12g08360
OsAffx.7523.1.S1_at--1049--6191Chr12:4253853..4253877 (25 bp)
GAGGCCAACTTTACCGGAGAAGCCG
LOC_Os12g08360
OsAffx.7523.1.S1_at--586--10331Chr12:4253862..4253886 (25 bp)
TTTACCGGAGAAGCCGTCCTAGCCG
LOC_Os12g08360
OsAffx.7523.1.S1_at--989--4571Chr12:4253937..4253961 (25 bp)
GCGCTGTGGAACTTACTGGCCGAGA
LOC_Os12g08360
OsAffx.7523.1.S1_at--207--9451Chr12:4253994..4254018 (25 bp)
TCGGAGAACGTGACGGGCCACGTCA
LOC_Os12g08360
OsAffx.7523.1.S1_at--711--1751Chr12:4254052..4254076 (25 bp)
ACCTCTGGGCTTTGTTGACGCACGG
LOC_Os12g08360
OsAffx.7523.1.S1_at--367--6651Chr12:4254065..4254089 (25 bp)
GTTGACGCACGGTGGGATTATCAAA
LOC_Os12g08360
Target Sequence 
GAGCTCTCCAAGCTGTTTGGCGCCGCCGGTGGCAAGGCACGGCCACGCGCCGCCCACAACGCCGTCGCCGCCGACAGCCG
CGAGGTGGCCACCGTGCTCTCCAACTATTGCGCCTACCTGCTGCTCCAGGCGCCGGAGCTGGTGACGGATGAGGTCCACG
ACGAGCGGCTGCTGATGGAGGCCGTGCAGGAGGCGATCCAGAACTACCTCCGAAACATAGGTTGCCGCCGCTCCAAAGAC
GCCATGTTCGCCAGCTTGCGAGAGTTCATGCCGGCCGACGAGGCCAACTTTACCGGAGAAGCCGTCCTAGCCGACGGCGC
ACAGCTGGGGTACCAGCTGCTCTCGGCCATGGCTGACGAGGCGGCGCTGTGGAACTTACTGGCCGAGATGTGGGTGGAGC
TGCTGCTGGCGGTTGCGCCGTCGGAGAACGTGACGGGCCACGTCAAGAAGCTGGCCACCGGCGGCGAGCTCATCACGCAC
CTCTGGGCTTTGTTGACGCACGGTGGGATTATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis