Browse Element(s) Details


OsAffx.7532.1.S1_at

Description tigr:9640.m00837
TID=OsAffx.7532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0899011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08960OsAffx.27789.3.S1_s_at11/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08960OsAffx.27789.2.S1_x_at5/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08970OsAffx.31656.1.S1_at11/1112+4693822..4695965hypothetical protein
LOC_Os12g08980NANA12+4697400..4698287SNARE domain containing protein, expressed
LOC_Os12g08990OsAffx.7532.1.S1_at11/1112+4701323..4701556hypothetical protein
LOC_Os12g09000Os.12097.1.S1_at11/1112+4705832..4710310thiamin biosynthesis protein, putative, expressed
LOC_Os12g09010NANA12+4711924..4712415hypothetical protein
LOC_Os12g09020NANA12+4713440..4714194retrotransposon protein, putative, unclassified
LOC_Os12g09030NANA12+4719819..4720796retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7532.1.S1_at--733--4231Chr12:4701363..4701387 (25 bp)
CCGAGTCGCCGGTCGCACGTACAGT
LOC_Os12g08990
OsAffx.7532.1.S1_at--505--7231Chr12:4701367..4701391 (25 bp)
GTCGCCGGTCGCACGTACAGTGGCC
LOC_Os12g08990
OsAffx.7532.1.S1_at--1082--7791Chr12:4701373..4701397 (25 bp)
GGTCGCACGTACAGTGGCCGTGGAA
LOC_Os12g08990
OsAffx.7532.1.S1_at--879--31Chr12:4701421..4701445 (25 bp)
ATTGGGCGAGGTGGCGACGCCGTCG
LOC_Os12g08990
OsAffx.7532.1.S1_at--649--3931Chr12:4701444..4701468 (25 bp)
CGGCGTCCTCTGTCCGTGCGAGGAA
LOC_Os12g08990
OsAffx.7532.1.S1_at--765--7251Chr12:4701448..4701472 (25 bp)
GTCCTCTGTCCGTGCGAGGAAGCTG
LOC_Os12g08990
OsAffx.7532.1.S1_at--317--9291Chr12:4701456..4701480 (25 bp)
TCCGTGCGAGGAAGCTGCATGCGAA
LOC_Os12g08990
OsAffx.7532.1.S1_at--222--2691Chr12:4701467..4701491 (25 bp)
AAGCTGCATGCGAAGGCCGAGGACC
LOC_Os12g08990
OsAffx.7532.1.S1_at--331--951Chr12:4701486..4701510 (25 bp)
AGGACCGCGCGATCGATCAGGTGCA
LOC_Os12g08990
OsAffx.7532.1.S1_at--1123--5811Chr12:4701488..4701512 (25 bp)
GACCGCGCGATCGATCAGGTGCAGT
LOC_Os12g08990
OsAffx.7532.1.S1_at--1157--1791Chr12:4701489..4701513 (25 bp)
ACCGCGCGATCGATCAGGTGCAGTG
LOC_Os12g08990
Target Sequence 
CCGAGTCGCCGGTCGCACGTACAGTGGCCGTGGAAGGCGAGGCAGCTATGGGGAAGGGATTGGGCGAGGTGGCGACGCCG
TCGGCGTCCTCTGTCCGTGCGAGGAAGCTGCATGCGAAGGCCGAGGACCGCGCGATCGATCAGGTGCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis