Browse Element(s) Details


OsAffx.7607.1.S1_at

Description tigr:9640.m01566
TID=OsAffx.7607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g160808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16060Os.40288.1.S1_x_at1/1112+9151798..9158333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16060Os.41248.4.S1_x_at1/1112+9151798..9158333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16070NANA12+9159547..9161422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16080OsAffx.7607.1.S1_at8/1112+9169230..9169920hypothetical protein
LOC_Os12g16090Os.17496.1.S1_at11/1112+9174973..9180074expressed protein
LOC_Os12g16100OsAffx.32056.1.S1_x_at9/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16100OsAffx.32056.1.S1_at2/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.3.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.1.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.4.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7607.1.S1_at--1025--7751Chr12:9169187..9169211 (25 bp)
GGTGATGATCAATAGTTATGCCCTA
NONE
OsAffx.7607.1.S1_at--591--7691Chr12:9169218..9169242 (25 bp)
GGGTACTTGTCCATGGCCATCAGAG
NONE
OsAffx.7607.1.S1_at--979--3611Chr12:9169223..9169247 (25 bp)
CTTGTCCATGGCCATCAGAGGGATG
NONE
OsAffx.7607.1.S1_at--260--4331Chr12:9169234..9169258 (25 bp)
CCATCAGAGGGATGGGCTTCCTGGT
LOC_Os12g16080
OsAffx.7607.1.S1_at--858--7731Chr12:9169256..9169280 (25 bp)
GGTGGTTTTGTGGACTACCTTCATC
LOC_Os12g16080
OsAffx.7607.1.S1_at--806--10391Chr12:9169261..9169285 (25 bp)
TTTTGTGGACTACCTTCATCCTCCT
LOC_Os12g16080
OsAffx.7607.1.S1_at--866--3791Chr12:9169341..9169804 (25 bp)
CTCGCACAAACAACTGGCACTGATG
LOC_Os12g16080
OsAffx.7607.1.S1_at--295--5111Chr12:9169796..9169820 (25 bp)
GCACTGATGTCAGAGATTCCAGGAC
LOC_Os12g16080
OsAffx.7607.1.S1_at--269--6591Chr12:9169810..9169834 (25 bp)
GATTCCAGGACAGCTGTGACGTCAA
LOC_Os12g16080
OsAffx.7607.1.S1_at--809--2151Chr12:9169819..9169843 (25 bp)
ACAGCTGTGACGTCAAAGAGCGACA
LOC_Os12g16080
OsAffx.7607.1.S1_at--356--4591Chr12:9169838..9169862 (25 bp)
GCGACAGGGAGGGACAGAATAATAA
LOC_Os12g16080
Target Sequence 
GGTGATGATCAATAGTTATGCCCTATTTATGGGGTACTTGTCCATGGCCATCAGAGGGATGGGCTTCCTGGTGGTTTTGT
GGACTACCTTCATCCTCCTCGGTGGCTTCGTCTCCATGCTCGAGAAGGACTTCTGGAGTCTCACCGTCATCACCCTCGCA
CAAACAACTGGCACTGATGTCAGAGATTCCAGGACAGCTGTGACGTCAAAGAGCGACAGGGAGGGACAGAATAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis