Browse Element(s) Details


Os.17496.1.S1_at

Description gb:AK101180.1
DB_XREF= gi:32986389
TID=Os.17496.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029E20, full insert sequence.
FL= gb:AK101180.1 gb:AK060733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1609011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16060Os.40288.1.S1_x_at1/1112+9151798..9158333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16060Os.41248.4.S1_x_at1/1112+9151798..9158333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16070NANA12+9159547..9161422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16080OsAffx.7607.1.S1_at8/1112+9169230..9169920hypothetical protein
LOC_Os12g16090Os.17496.1.S1_at11/1112+9174973..9180074expressed protein
LOC_Os12g16100OsAffx.32056.1.S1_x_at9/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16100OsAffx.32056.1.S1_at2/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.3.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.1.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.4.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16120OsAffx.31758.1.S1_at9/1112+9202679..9204272hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17496.1.S1_at--681--2771Chr12:9179502..9179526 (25 bp)
AAGAGGCAGGCACAAACTACACCCG
LOC_Os12g16090
Os.17496.1.S1_at--672--511Chr12:9179574..9179598 (25 bp)
ATCGTATGCTGATCTGCAGACTGTT
LOC_Os12g16090
Os.17496.1.S1_at--1090--7031Chr12:9179625..9179649 (25 bp)
GTACAATCCCTGAAAACTGTCTCTG
LOC_Os12g16090
Os.17496.1.S1_at--854--7151Chr12:9179643..9179667 (25 bp)
GTCTCTGTAATCTGTATGTGTGCTG
LOC_Os12g16090
Os.17496.1.S1_at--88--9591Chr12:9179679..9179703 (25 bp)
TCTTGTCAATTGTCCCATCTATTTC
LOC_Os12g16090
Os.17496.1.S1_at--980--6651Chr12:9179736..9179760 (25 bp)
GTTGAGCTTTATTGGCAGTTCGTAT
LOC_Os12g16090
Os.17496.1.S1_at--890--5031Chr12:9179750..9179774 (25 bp)
GCAGTTCGTATAATATCCTCTTGGA
LOC_Os12g16090
Os.17496.1.S1_at--100--6231Chr12:9179806..9179830 (25 bp)
GAGGCCAAGGATCTGCATCAACCTA
LOC_Os12g16090
Os.17496.1.S1_at--857--10431Chr12:9179838..9179862 (25 bp)
TTCAGTACTTGCTCACCTATGTTAG
LOC_Os12g16090
Os.17496.1.S1_at--906--3371Chr12:9179931..9179955 (25 bp)
CACCAATTCTGATGTACTCGTCTAA
LOC_Os12g16090
Os.17496.1.S1_at--995--8111Chr12:9179975..9179999 (25 bp)
GGACGGAACTCAGCCCATCTGAAGT
LOC_Os12g16090
Target Sequence 
AAGAGGCAGGCACAAACTACACCCGCTCCATCAATGGAGACCAGCTGATTGAGTANACAGACTATCAACACGATCGTATG
CTGATCTGCAGACTGTTGGCAGTAATNCCTGGAAACTGNCACCGTACAATCCCTGAAAACTGTCTCTGTAATCTGTATGT
GTGCTGAAACTTATCTATCTTGTCAATTGTCCCATCTATTTCAAAAACTTTCAAGTTGAACTTTACNACAAACTGTTGAG
CTTTATTGGCAGTTCGTATAATATCCTCTTGGAACAGTAGATAAAACCTATCTGAAGAGGTGAAGAGGCCAAGGATCTGC
ATCAACCTACTGCACATTCAGTACTTGCTCACCTATGTTAGGGGTGAAACAACTATTACATAATTCGGGTATTTTGTATG
CATTTTAAAACAAGTTGGATAATCAGAGACACCAATTCTGATGTACTCGTCTAATAAATTTATCCAGGACTTCGGACGGA
ACTCAGCCCATCTGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis