Browse Element(s) Details


OsAffx.31758.1.S1_at

Description tigr:9640.m01570
TID=OsAffx.31758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g161209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16090Os.17496.1.S1_at11/1112+9174973..9180074expressed protein
LOC_Os12g16100OsAffx.32056.1.S1_x_at9/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16100OsAffx.32056.1.S1_at2/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.3.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.1.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.4.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16120OsAffx.31758.1.S1_at9/1112+9202679..9204272hypothetical protein
LOC_Os12g16130Os.25420.1.S1_at11/1112+9206998..9209041hAT family dimerisation domain containing protein, expressed
LOC_Os12g16140Os.31845.1.S1_x_at1/1112+9214216..9217417hypothetical protein
LOC_Os12g16150OsAffx.22699.1.S1_x_at2/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150OsAffx.8279.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150Os.52731.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16160OsAffx.31759.1.S1_at10/1112+9227564..9228751CCT motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31758.1.S1_at--278--9891NONE
TACTTGATGCTCCAAACTCGCCACT
NONE
OsAffx.31758.1.S1_at--50--4411Chr12:9203689..9203713 (25 bp)
GCCACTCACGTACTCTTAAAATCAA
LOC_Os12g16120
OsAffx.31758.1.S1_at--901--3191Chr12:9203667..9203691 (25 bp)
CAATGAAATACTTCTTGGTTGTCTC
LOC_Os12g16120
OsAffx.31758.1.S1_at--1100--7911Chr12:9203526..9203675 (25 bp)
GGTTGTCTCCAGTATAAGGCGTATA
LOC_Os12g16120
OsAffx.31758.1.S1_at--1116--6851Chr12:9203491..9203515 (25 bp)
GTTTGGCTTATCATCAGTTACACTA
LOC_Os12g16120
OsAffx.31758.1.S1_at--491--9771Chr12:9203431..9203455 (25 bp)
TAAGTGGCCATTACTCACCAGGGAG
LOC_Os12g16120
OsAffx.31758.1.S1_at--514--7171NONE
GTGAAGGGTTTCACCACTAGTGAGC
NONE
OsAffx.31758.1.S1_at--406--1711Chr12:9202878..9202902 (25 bp)
ACCACTAGTGAGCAGGGTTTGCAAA
LOC_Os12g16120
OsAffx.31758.1.S1_at--627--6851Chr12:9202862..9202886 (25 bp)
GTTTGCAAAACCGTCAGCAACCGTG
LOC_Os12g16120
OsAffx.31758.1.S1_at--387--8791Chr12:9202733..9202852 (25 bp)
TGCTTACGACGGGTTTGCCACGGTT
LOC_Os12g16120
OsAffx.31758.1.S1_at--109--10291Chr12:9202720..9202744 (25 bp)
TTTGCCACGGTTACCATGGTTACCG
LOC_Os12g16120
Target Sequence 
TACTTGATGCTCCAAACTCGCCACTCACGTACTCTTAAAATCAATGAAATACTTCTTGGTTGTCTCCAGTATAAGGCGTA
TAAATCCAGGAAGTTTGGCTTATCATCAGTTACACTATTTAAAAAGAAAGATTATTGCAATGAAATACCAAATAAGTGGC
CATTACTCACCAGGGAGGTGAAGGGTTTCACCACTAGTGAGCAGGGTTTGCAAAACCGTCAGCAACCGTGCGGTTACCGT
GCTTACGACGGGTTTGCCACGGTTACCATGGTTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis