Browse Element(s) Details


Os.25420.1.S1_at

Description gb:AK106352.1
DB_XREF= gi:32991561
TID=Os.25420.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A01, full insert sequence.
FL= gb:AK106352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1613011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16100OsAffx.32056.1.S1_x_at9/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16100OsAffx.32056.1.S1_at2/1112+9189762..9192917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.3.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.1.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16110OsAffx.10637.4.S1_s_at7/1112+9194622..9197908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16120OsAffx.31758.1.S1_at9/1112+9202679..9204272hypothetical protein
LOC_Os12g16130Os.25420.1.S1_at11/1112+9206998..9209041hAT family dimerisation domain containing protein, expressed
LOC_Os12g16140Os.31845.1.S1_x_at1/1112+9214216..9217417hypothetical protein
LOC_Os12g16150OsAffx.22699.1.S1_x_at2/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150OsAffx.8279.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150Os.52731.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16160OsAffx.31759.1.S1_at10/1112+9227564..9228751CCT motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25420.1.S1_at--250--5971Chr12:9208459..9208483 (25 bp)
GAGAAGTTTGGCAGCACACTCCGTC
LOC_Os12g16130
Os.25420.1.S1_at--790--4531Chr12:9208497..9208521 (25 bp)
GCCCTCTTCACTGGTCTTTAGATTA
LOC_Os12g16130
Os.25420.1.S1_at--271--5911Chr12:9208561..9208585 (25 bp)
GAGCTTCAAAAGGATTCCTCGCCCT
LOC_Os12g16130
Os.25420.1.S1_at--833--331Chr12:9208632..9208656 (25 bp)
ATACATCGAGACTCCATGCTCGTTG
LOC_Os12g16130
Os.25420.1.S1_at--1048--611Chr12:9208647..9208671 (25 bp)
ATGCTCGTTGCGTCTTAATTCTCGT
LOC_Os12g16130
Os.25420.1.S1_at--154--9751Chr12:9208662..9208686 (25 bp)
TAATTCTCGTGGACCTGATCCCAAT
LOC_Os12g16130
Os.25420.1.S1_at--384--2891Chr12:9208743..9208767 (25 bp)
AAGGGATGTCCTTGCGTCTCCTGTG
LOC_Os12g16130
Os.25420.1.S1_at--1084--6431Chr12:9208826..9208850 (25 bp)
GATCATGTCTAGCACCGGACATTTT
LOC_Os12g16130
Os.25420.1.S1_at--51--10851Chr12:9208877..9208901 (25 bp)
TTGGAAATGCTGCTACTCGAGAACA
LOC_Os12g16130
Os.25420.1.S1_at--1062--9191Chr12:9208962..9208986 (25 bp)
TCCAATGTGTTTTACCTCCTATGGT
LOC_Os12g16130
Os.25420.1.S1_at--213--10111Chr12:9208981..9209005 (25 bp)
TATGGTTCCAGTGTTCAGCTCATCT
LOC_Os12g16130
Target Sequence 
GAGAAGTTTGGCAGCACACTCCGTCCACCACCATCACCGCCCTCTTCACTGGTCTTTAGATTATTCGCTGCTAGACTGAA
GGAGTTGGAGCTGAAGGAGTTGGAGCTTCAAAAGGATTCCTCGCCCTCTTCATCAGTACACCAACGAAAAGCCAAAAACG
AGTTCAACAAGAAATACATCGAGACTCCATGCTCGTTGCGTCTTAATTCTCGTGGACCTGATCCCAATATTATCATGTGG
TGGAAGGACAACAAACTTTTTCATGTTGTGTTAGCTCAACTAGCAAGGGATGTCCTTGCGTCTCCTGTGTCGACAGTCTC
TTCTGCAGATGCATTCAACATCAACGGAAGAGTAGTTGAAGATCAAAGATCATGTCTAGCACCGGACATTTTAGAGGCAA
TCATGTGCCTGAAAGATTTTGGAAATGCTGCTACTCGAGAACAGGATAGAATGGTGAATGCTGAGTTTGCTAGTGTGGTA
TGCCTTGATATGTAATCAAGCAATCCAATGTGTTTTACCTCCTATGGTTCCAGTGTTCAGCTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis