Browse Element(s) Details


OsAffx.7626.1.S1_at

Description tigr:9640.m01754
TID=OsAffx.7626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1787011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17850NANA12+10230130..10231872retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17860OsAffx.7625.1.S1_at11/1112+10233453..10240131retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g17870OsAffx.7626.1.S1_at11/1112+10246200..10246613hypothetical protein
LOC_Os12g17880Os.11711.1.S1_at11/1112+10251549..10254854U-box domain containing protein, expressed
LOC_Os12g17890OsAffx.25135.2.S1_x_at7/1112+10255645..10256376hypothetical protein
LOC_Os12g17890OsAffx.3516.1.S1_x_at1/1112+10255645..10256376hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7626.1.S1_at--258--9491Chr12:10246376..10246400 (25 bp)
TCTGCTATACGGAAATCGCGGAAGA
LOC_Os12g17870
OsAffx.7626.1.S1_at--996--1911Chr12:10246368..10246392 (25 bp)
ACGGAAATCGCGGAAGAACTGTGAA
LOC_Os12g17870
OsAffx.7626.1.S1_at--694--3031Chr12:10246363..10246387 (25 bp)
AATCGCGGAAGAACTGTGAAAGCTT
LOC_Os12g17870
OsAffx.7626.1.S1_at--783--5371Chr12:10246356..10246380 (25 bp)
GAAGAACTGTGAAAGCTTGCCGAGC
LOC_Os12g17870
OsAffx.7626.1.S1_at--947--1431Chr12:10246354..10246378 (25 bp)
AGAACTGTGAAAGCTTGCCGAGCTG
LOC_Os12g17870
OsAffx.7626.1.S1_at--95--3351Chr12:10246314..10246338 (25 bp)
CACGGCATGGAGAAGTGGCTACCAC
LOC_Os12g17870
OsAffx.7626.1.S1_at--202--5971Chr12:10246305..10246329 (25 bp)
GAGAAGTGGCTACCACTTGCGCGAA
LOC_Os12g17870
OsAffx.7626.1.S1_at--699--1091Chr12:10246301..10246325 (25 bp)
AGTGGCTACCACTTGCGCGAAGTGT
LOC_Os12g17870
OsAffx.7626.1.S1_at--830--8491Chr12:10246299..10246323 (25 bp)
TGGCTACCACTTGCGCGAAGTGTTG
LOC_Os12g17870
OsAffx.7626.1.S1_at--897--9971Chr12:10246295..10246319 (25 bp)
TACCACTTGCGCGAAGTGTTGATGA
LOC_Os12g17870
OsAffx.7626.1.S1_at--544--10691Chr12:10246289..10246313 (25 bp)
TTGCGCGAAGTGTTGATGAACTACC
LOC_Os12g17870
Target Sequence 
TCTGCTATACGGAAATCGCGGAAGAACTGTGAAAGCTTGCCGAGCTGGTTATCAAAACCAACCACGGCATGGAGAAGTGG
CTACCACTTGCGCGAAGTGTTGATGAACTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis