Browse Element(s) Details


OsAffx.7625.1.S1_at

Description tigr:9640.m01753
TID=OsAffx.7625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1786011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17830Os.51478.1.S1_at11/1112+10206083..10208512expressed protein
LOC_Os12g17830OsAffx.31788.1.S1_s_at11/1112+10206083..10208512expressed protein
LOC_Os12g17840Os.56228.1.S1_at10/1112+10208921..10209849Ubiquitin family protein, expressed
LOC_Os12g17850NANA12+10230130..10231872retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17860OsAffx.7625.1.S1_at11/1112+10233453..10240131retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g17870OsAffx.7626.1.S1_at11/1112+10246200..10246613hypothetical protein
LOC_Os12g17880Os.11711.1.S1_at11/1112+10251549..10254854U-box domain containing protein, expressed
LOC_Os12g17890OsAffx.25135.2.S1_x_at7/1112+10255645..10256376hypothetical protein
LOC_Os12g17890OsAffx.3516.1.S1_x_at1/1112+10255645..10256376hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7625.1.S1_at--87--2351Chr12:10238841..10238865 (25 bp)
AAAGCACGCGGGTCCTTATGATGGG
LOC_Os12g17860
OsAffx.7625.1.S1_at--1126--931Chr12:10237633..10237657 (25 bp)
AGGAACTGCGAAAGCTTGCCGAGAT
LOC_Os12g17860
OsAffx.7625.1.S1_at--16--2751Chr12:10237583..10237607 (25 bp)
AAGAAGTGGCTACCGCTTGTGCGAA
LOC_Os12g17860
OsAffx.7625.1.S1_at--694--7291Chr12:10237558..10237582 (25 bp)
GTGCGAAGCTGATCCTTGACTTCAT
LOC_Os12g17860
OsAffx.7625.1.S1_at--1099--6191Chr12:10237464..10237488 (25 bp)
GAGGCTCCTCGGCAATGCGTACAAT
LOC_Os12g17860
OsAffx.7625.1.S1_at--520--10131Chr12:10237440..10237464 (25 bp)
TTACCTTACCATGTACAGCCAGAGC
LOC_Os12g17860
OsAffx.7625.1.S1_at--279--3191Chr12:10237405..10237429 (25 bp)
CAATCAGCCGCTTTGGTAGGAGCTC
LOC_Os12g17860
OsAffx.7625.1.S1_at--840--8971Chr12:10237368..10237392 (25 bp)
TGAACAGATCACAGACGCCCAGAAC
LOC_Os12g17860
OsAffx.7625.1.S1_at--187--1491Chr12:10237324..10237348 (25 bp)
AGCAACTACCCGCTGTTAGCCATAG
LOC_Os12g17860
OsAffx.7625.1.S1_at--913--10451Chr12:10237309..10237333 (25 bp)
TTAGCCATAGCCAGATGTCCGGTCT
LOC_Os12g17860
OsAffx.7625.1.S1_at--873--9291Chr12:10237159..10237294 (25 bp)
TCCGCAGTTCAGAGAGTCACGACAT
LOC_Os12g17860
Target Sequence 
AAAGCACGCGGGTCCTTATGATGGGAAAGGCTCCGAACTAAACATCGTTTCACAAGATGTAGCTACTGCTGAAAATAATT
CAGCTACAGAAATCGTGGAGGAACTGCGAAAGCTTGCCGAGATGGTTATCAAAACCAACCACGCCATGAAGAAGTGGCTA
CCGCTTGTGCGAAGTGCGAAGCTGATCCTTGACTTCATGAACTACCTCCAAGGTCTTGGGATGACGGCGCAGGACGTGGC
GTCGCTGAACCAGCTGACCAGGCTCAAGAGGCTCCTCGGCAATGCGTACAATTACCTTACCATGTACAGCCAGAGCGGCT
GGACCACAATCAGCCGCTTTGGTAGGAGCTCGAGGAGGATAGATGAACAGATCACAGACGCCCAGAACAAGATCGACCTC
TACCTCGAGCAACTACCCGCTGTTAGCCATAGCCAGATGTCCGGTCTCCTCGGAGGCATCCTCCGCAGTTCAGAGAGTCA
CGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis