Browse Element(s) Details


Os.51478.1.S1_at

Description gb:AK062912.1
DB_XREF= gi:32972930
TID=Os.51478.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G10, full insert sequence.
FL= gb:AK062912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1783011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17790OsAffx.7624.1.S1_at11/1112+10180689..10182436hypothetical protein
LOC_Os12g17800OsAffx.28520.1.S1_at1/1112+10186201..10190656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17810OsAffx.31787.1.S1_at11/1112+10197971..10200074hypothetical protein
LOC_Os12g17820OsAffx.19722.1.S1_at11/1112+10204463..10205078expressed protein
LOC_Os12g17830Os.51478.1.S1_at11/1112+10206083..10208512expressed protein
LOC_Os12g17830OsAffx.31788.1.S1_s_at11/1112+10206083..10208512expressed protein
LOC_Os12g17840Os.56228.1.S1_at10/1112+10208921..10209849Ubiquitin family protein, expressed
LOC_Os12g17850NANA12+10230130..10231872retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17860OsAffx.7625.1.S1_at11/1112+10233453..10240131retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51478.1.S1_at--839--2411Chr12:10206385..10206409 (25 bp)
AAAACAACTACTGCATTCGCCACTT
LOC_Os12g17830
Os.51478.1.S1_at--44--9531Chr12:10206344..10206368 (25 bp)
TCTCTTGAGCCATCAATATGTTCAT
LOC_Os12g17830
Os.51478.1.S1_at--38--6751Chr12:10206325..10206349 (25 bp)
GTTCATAGGGTGCTCATTATGCAAA
LOC_Os12g17830
Os.51478.1.S1_at--731--5231Chr12:10206296..10206320 (25 bp)
GAATAGGTGTGATTTTGGCTCGAGA
LOC_Os12g17830
Os.51478.1.S1_at--82--8331Chr12:10206280..10206304 (25 bp)
GGCTCGAGAGTTGAACTGTGGACAT
LOC_Os12g17830
Os.51478.1.S1_at--114--211Chr12:10206217..10206241 (25 bp)
ATTTGATTCCGCATCAGTCTATTGA
LOC_Os12g17830
Os.51478.1.S1_at--831--3451Chr12:10206203..10206227 (25 bp)
CAGTCTATTGAGTTGTTGTACAGTT
LOC_Os12g17830
Os.51478.1.S1_at--299--6871Chr12:10206178..10206202 (25 bp)
GTATTCGGTTCAACTCAGGGTGCCA
LOC_Os12g17830
Os.51478.1.S1_at--282--9711Chr12:10206169..10206193 (25 bp)
TCAACTCAGGGTGCCATTTGAGCTT
LOC_Os12g17830
Os.51478.1.S1_at--42--8251Chr12:10206103..10206127 (25 bp)
GGCACAAATTGCCTGGTGTATCAGT
LOC_Os12g17830
Os.51478.1.S1_at--186--391Chr12:10206084..10206108 (25 bp)
ATCAGTAATTCGACATTTGCTGGGA
LOC_Os12g17830
Target Sequence 
AAAACAACTACTGCATTCGCCACTTNGAATATATAGCTTGNTCTCTTGAGCCATCAATATGTTCATAGGGTGCTCATTAT
GCAAAGAAAGAATAGGTGTGATTTTGGCTCGAGAGTTGAACTGTGGACATGTATAGCAAGAGAGCTGGTNTACAATATCA
CAGTAGTAATTTGATTCCGCATCAGTCTATTGAGTTGTTGTACAGTTGTATTCGGTTCAACTCAGGGTGCCATTTGAGCT
TACTTTAGAAATGATAATTGAATTACTCAACAGAAAATTGTAGGCACAAATTGCCTGGTGTATCAGTAATTCGACATTTG
CTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis