Browse Element(s) Details


OsAffx.31788.1.S1_s_at

Description tigr:9640.m01750
TID=OsAffx.31788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1783011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17790OsAffx.7624.1.S1_at11/1112+10180689..10182436hypothetical protein
LOC_Os12g17800OsAffx.28520.1.S1_at1/1112+10186201..10190656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17810OsAffx.31787.1.S1_at11/1112+10197971..10200074hypothetical protein
LOC_Os12g17820OsAffx.19722.1.S1_at11/1112+10204463..10205078expressed protein
LOC_Os12g17830Os.51478.1.S1_at11/1112+10206083..10208512expressed protein
LOC_Os12g17830OsAffx.31788.1.S1_s_at11/1112+10206083..10208512expressed protein
LOC_Os12g17840Os.56228.1.S1_at10/1112+10208921..10209849Ubiquitin family protein, expressed
LOC_Os12g17850NANA12+10230130..10231872retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17860OsAffx.7625.1.S1_at11/1112+10233453..10240131retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31788.1.S1_s_at--1151--1231Chr12:10207043..10207067 (25 bp)
AGTTGTTCAAACAGCATGGAAGGTT
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--485--3471Chr12:10206850..10206872 (23 bp)
CAGGTTCGGTTCCACGGCCAGTTGC
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--996--8411Chr12:10206835..10206859 (25 bp)
GGCCAGTTGCCAGGATAGGTGTTAC
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--139--10091Chr12:10206820..10206844 (25 bp)
TAGGTGTTACCTTTGTTGCTTTGTC
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--520--6671Chr12:10206806..10206830 (25 bp)
GTTGCTTTGTCCATTGCCCTTTTTC
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--511--10691Chr12:10206793..10206817 (25 bp)
TTGCCCTTTTTCTTCTCAAGTCTGT
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--345--9731Chr12:10206778..10206802 (25 bp)
TCAAGTCTGTTGTCTCCACCGCATT
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--1103--3351Chr12:10206552..10206786 (25 bp)
CACCGCATTCTTCGTATTGGCAATG
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--150--10191Chr12:10206519..10206543 (25 bp)
TATATACTTGGGTTTCCTGGCTATG
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--120--7871Chr12:10206509..10206533 (25 bp)
GGTTTCCTGGCTATGAACCCAAAGG
LOC_Os12g17830
OsAffx.31788.1.S1_s_at--814--5851Chr12:10206463..10206487 (25 bp)
GAGCCAATTCATCTGAAGACCCTGT
LOC_Os12g17830
Target Sequence 
AGTTGTTCAAACAGCATGGAAGGTTGGTAGGGATGCTGTTGAGGCAGGAACTACTCTAGTCCCAGGTTCGGTTCCACGGC
CAGTTGCCAGGATAGGTGTTACCTTTGTTGCTTTGTCCATTGCCCTTTTTCTTCTCAAGTCTGTTGTCTCCACCGCATTC
TTCGTATTGGCAATGATGGGGCTTATATACTTGGGTTTCCTGGCTATGAACCCAAAGGAGGGCTCTAGGGTGGATGAAGG
AGCCAATTCATCTGAAGACCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31788.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis