Browse Element(s) Details


Os.56228.1.S1_at

Description gb:AK109655.1
DB_XREF= gi:32994864
TID=Os.56228.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F01, full insert sequence.
FL= gb:AK109655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1784010/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17800OsAffx.28520.1.S1_at1/1112+10186201..10190656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17810OsAffx.31787.1.S1_at11/1112+10197971..10200074hypothetical protein
LOC_Os12g17820OsAffx.19722.1.S1_at11/1112+10204463..10205078expressed protein
LOC_Os12g17830Os.51478.1.S1_at11/1112+10206083..10208512expressed protein
LOC_Os12g17830OsAffx.31788.1.S1_s_at11/1112+10206083..10208512expressed protein
LOC_Os12g17840Os.56228.1.S1_at10/1112+10208921..10209849Ubiquitin family protein, expressed
LOC_Os12g17850NANA12+10230130..10231872retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17860OsAffx.7625.1.S1_at11/1112+10233453..10240131retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56228.1.S1_at--495--1051Chr12:10209189..10209213 (25 bp)
AGGTGAGCGACATGCTGGCGGTGAA
LOC_Os12g17840
Os.56228.1.S1_at--330--9531Chr12:10209093..10209117 (25 bp)
TCTACAAGCAGAACGTGATGGAGGA
LOC_Os12g17840
Os.56228.1.S1_at--522--5091Chr12:10209063..10209087 (25 bp)
GCACGCTGCGGTGGCACGACGTCAA
LOC_Os12g17840
Os.56228.1.S1_at--1084--1851Chr12:10209048..10209072 (25 bp)
ACGACGTCAAGAACGGCGACACCAT
LOC_Os12g17840
Os.56228.1.S1_at--707--4591Chr12:10209033..10209057 (25 bp)
GCGACACCATCGAGATCTTCAACGG
LOC_Os12g17840
Os.56228.1.S1_at--644--9371Chr12:10209024..10209048 (25 bp)
TCGAGATCTTCAACGGCAGGGTCAC
LOC_Os12g17840
Os.56228.1.S1_at--548--8351Chr12:10208998..10209022 (25 bp)
GGCGGCGCCTGATCACGAACCCAAT
LOC_Os12g17840
Os.56228.1.S1_at--970--6431Chr12:10208988..10209012 (25 bp)
GATCACGAACCCAATCAATCCAATG
LOC_Os12g17840
Os.56228.1.S1_at--488--4111Chr12:10208983..10209007 (25 bp)
CGAACCCAATCAATCCAATGGATTT
LOC_Os12g17840
Os.56228.1.S1_at--951--7931Chr12:10208964..10208988 (25 bp)
GGATTTCCATCCTTGTAAAATTCCT
LOC_Os12g17840
Os.56228.1.S1_at--724--8931NONE
TTCGGTAAAATCTCGTTGGGACGCG
NONE
Target Sequence 
AGGTGAGCGACATGCTGGCGGTGAAGGACCTGCGCGCGGAGCTCGGCGGCGCGGCGGCGCACCTGCCGCTGCCCAAGGAC
GGCGGCTACTTCTTCATCTACAAGCAGAACGTGATGGAGGAGGACCGCACGCTGCGGTGGCACGACGTCAAGAACGGCGA
CACCATCGAGATCTTCAACGGCAGGGTCACCGGCGGCGCCTGATCACGAACCCAATCAATCCAATGGATTTCCATCCTTG
TAAAATTCCTTTTTCGTGTAAACAAATTCGGTAAAATCTCGTTGGGACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis