Browse Element(s) Details


OsAffx.7632.1.S1_at

Description tigr:9640.m01825
TID=OsAffx.7632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1855011/11hypothetical protein
LOC_Os03g262801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18510OsAffx.31798.1.S1_at11/1112+10698358..10701432hypothetical protein
LOC_Os12g18510OsAffx.4864.1.S1_at1/1112+10698358..10701432hypothetical protein
LOC_Os12g18520OsAffx.19729.1.S1_at11/1112+10707377..10707694hypothetical protein
LOC_Os12g18530Os.56361.1.S1_at11/1112+10709377..10715228Nucleotidyltransferase domain containing protein, expressed
LOC_Os12g18540Os.20602.2.S1_x_at10/1112+10716503..10718683hAT family dimerisation domain containing protein
LOC_Os12g18550OsAffx.7632.1.S1_at11/1112+10722045..10722382hypothetical protein
LOC_Os12g18560Os.57041.1.S1_at11/1112+10729706..10730828pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g18570OsAffx.19730.1.S1_at11/1112+10735227..10735637hypothetical protein
LOC_Os12g18590OsAffx.31799.1.S1_at11/1112+10737739..10740929hypothetical protein
LOC_Os12g18600OsAffx.19542.3.S1_x_at7/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18600OsAffx.21754.1.S1_x_at1/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7632.1.S1_at--769--1511Chr12:10722100..10722124 (25 bp)
AGCAGCGCGACGGTATCTGGAAGCT
LOC_Os12g18550
OsAffx.7632.1.S1_at--11--4571Chr12:10722104..10722128 (25 bp)
GCGCGACGGTATCTGGAAGCTCAAT
LOC_Os12g18550
OsAffx.7632.1.S1_at--729--5751Chr12:10722108..10722132 (25 bp)
GACGGTATCTGGAAGCTCAATGCTA
LOC_Os12g18550
OsAffx.7632.1.S1_at--455--491Chr12:10722114..10722138 (25 bp)
ATCTGGAAGCTCAATGCTAAGGCGA
LOC_Os12g18550
OsAffx.7632.1.S1_at--1013--3191Chr12:10722125..10722232 (25 bp)
CAATGCTAAGGCGAGCGGTTGCTAC
LOC_Os12g18550
OsAffx.7632.1.S1_at--914--471Chr12:10722127..10722234 (25 bp)
ATGCTAAGGCGAGCGGTTGCTACGT
LOC_Os12g18550
OsAffx.7632.1.S1_at--999--4071Chr12:10722098..10722243 (25 bp)
CGAGCGGTTGCTACGTGGAGGGAGA
LOC_Os12g18550
OsAffx.7632.1.S1_at--914--8531Chr12:10722234..10722258 (25 bp)
TGGAGGGAGAATGCATGGCAACCAA
LOC_Os12g18550
OsAffx.7632.1.S1_at--74--1071Chr12:10722237..10722261 (25 bp)
AGGGAGAATGCATGGCAACCAAGGT
LOC_Os12g18550
OsAffx.7632.1.S1_at--232--2272Chr12:10722323..10722347 (25 bp)
AAATCAATCGATTTAGATTCAGCAC
LOC_Os12g18550
OsAffx.7632.1.S1_at--27--3051Chr12:10722328..10722352 (25 bp)
AATCGATTTAGATTCAGCACAATCA
LOC_Os12g18550
Target Sequence 
AGCAGCGCGACGGTATCTGGAAGCTCAATGCTAAGGCGAGCGGTTGCTACGTGGAGGGAGAATGCATGGCAACCAAGGTG
ATGAAGGAATCGAGGGAGAAAGAATGTGTTCAACAGCTGCTCAATGCGAAAACAGAAGTAAAATCAATCGATTTAGATTC
AGCACAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis