Browse Element(s) Details


OsAffx.7664.1.S1_x_at

Description tigr:9640.m02156
TID=OsAffx.7664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g227708/11hypothetical protein
LOC_Os01g086001/11expressed protein
LOC_Os05g419401/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22740Os.46012.2.S1_x_at4/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.27088.1.A1_x_at3/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.46012.3.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.54691.1.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22750NANA12+12838213..12838922hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7664.1.S1_x_at--467--4351Chr12:12845244..12845267 (24 bp)
CCAGCATTATGACAGGAGGAGCAAT
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--886--971Chr12:12845260..12845390 (25 bp)
AGGAGCAATTTCATGTCGCACAGTT
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--60--8431Chr12:12845492..12845515 (24 bp)
GGCCTTAACGATGGCGAACACTGGA
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--305--2471NONE
AACACTGGACACAGGAGGGTTCTTG
NONE
OsAffx.7664.1.S1_x_at--291--5872Chr12:12846103..12846127 (25 bp)
GAGGGTTCTTGGATGCCGGAAAGGA
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--290--10873Chr12:12846164..12846188 (25 bp)
TTGGCCCGTAGCCTTCAAAGTGTCG
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--818--3811Chr12:12846194..12846218 (25 bp)
CTCCATGTCGGCTTCAGCAGCCAGT
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--924--9411Chr12:12846227..12846251 (25 bp)
TCGTCGCTGATCTTGTTCCACGCTA
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--372--3871Chr12:12846233..12846519 (25 bp)
CTGATCTTGTTCCACGCTAGATTGC
LOC_Os12g22770
OsAffx.7664.1.S1_x_at--339--6431NONE
GATCTTGTTCCACGCTAGATTGCAC
NONE
OsAffx.7664.1.S1_x_at--1148--3611NONE
CTTGTTCCACGCTAGATTGCACGTG
NONE
Target Sequence 
CCAGCATTATGACAGGAGGAGCAATTTCATGTCGCACAGTTAAAGGATCAGGAAGCAGCAGCAGGAAGAAGATGGAGACT
GCAGATGATCATGAGTACTGCTACTATTACTATGAAGAACAAGCATCATCTGTTGCTGTTGGGGCCTTAACGATGGCGAA
CACTGGACACAGGAGGGTTCTTGGATGCCGGAAAGGAGAGGAGAGGAGAGGAGGAGGAGAGGGTTCTTGGTTCTTGGCCC
GTAGCCTTCAAAGTGTCGGCACCCTCCATGTCGGCTTCAGCAGCCAGTGCAGCCCCTCGTCGCTGATCTTGTTCCACGCT
AGATTGCACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7664.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis