Browse Element(s) Details


OsAffx.7711.1.S1_at

Description tigr:9640.m02614
TID=OsAffx.7711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2720011/11hypothetical protein
LOC_Os03g116701/11RSP67.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27150NANA12+15928891..15935542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27160NANA12+15937808..15940036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27170NANA12+15942478..15944300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27180NANA12+15947988..15948341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27190OsAffx.19847.1.S1_at11/1112+15954819..15959208expressed protein
LOC_Os12g27200OsAffx.7711.1.S1_at11/1112+15960022..15960786hypothetical protein
LOC_Os12g27210Os.53544.1.S1_at11/1112+15963259..15965871expressed protein
LOC_Os12g27220OsAffx.19849.1.S1_x_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27220OsAffx.19849.1.S1_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27230OsAffx.10637.1.S1_s_at10/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.3.S1_s_at7/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.4.S1_s_at6/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.2.S1_at1/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27240OsAffx.32056.1.S1_x_at7/1112+15980282..15984976transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7711.1.S1_at--635--4132Chr12:15960091..15960115 (25 bp)
CGCTGCTCGGGAGTCGCATCTCAAG
LOC_Os12g27200
OsAffx.7711.1.S1_at--807--7271Chr12:15960125..15960149 (25 bp)
GTGCCGTTCCAGAGGCGCCCGATAA
LOC_Os12g27200
OsAffx.7711.1.S1_at--54--6471Chr12:15960145..15960553 (25 bp)
GATAAGGCCGGCTGGTGTTCTCAGC
LOC_Os12g27200
OsAffx.7711.1.S1_at--931--8331Chr12:15960542..15960562 (21 bp)
GGCTGGTGTTCTCAGCTTTTCTTCC
LOC_Os12g27200
OsAffx.7711.1.S1_at--731--1531Chr12:15960551..15960575 (25 bp)
AGCTTTTCTTCCTCCACAGATTTCT
LOC_Os12g27200
OsAffx.7711.1.S1_at--329--2112Chr12:15960566..15960698 (25 bp)
ACAGATTTCTTCTAATGGTTTGGCA
LOC_Os12g27200
OsAffx.7711.1.S1_at--813--6531Chr12:15960569..15960701 (25 bp)
GATTTCTTCTAATGGTTTGGCATAT
LOC_Os12g27200
OsAffx.7711.1.S1_at--1099--7851Chr12:15960690..15960714 (25 bp)
GGTTTGGCATATAATCAATAACACA
LOC_Os12g27200
OsAffx.7711.1.S1_at--8--3191Chr12:15960713..15960737 (25 bp)
CAATCTACAATGCTTCCAATTCAGA
LOC_Os12g27200
OsAffx.7711.1.S1_at--927--3011Chr12:15960721..15960745 (25 bp)
AATGCTTCCAATTCAGATATACCTG
LOC_Os12g27200
OsAffx.7711.1.S1_at--595--10511Chr12:15960732..15960756 (25 bp)
TTCAGATATACCTGCAAAGAGAGTG
LOC_Os12g27200
Target Sequence 
CGCTGCTCGGGAGTCGCATCTCAAGGAGCTCGACGTGCCGTTCCAGAGGCGCCCGATAAGGCCGGCTGGTGTTCTCAGCT
TTTCTTCCTCCACAGATTTCTTCTAATGGTTTGGCATATAATCAATAACACAATCTACAATGCTTCCAATTCAGATATAC
CTGCAAAGAGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis