Browse Element(s) Details


OsAffx.7765.1.S1_at

Description tigr:9640.m03135
TID=OsAffx.7765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BAF60b domain of the SWIB complex, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g322804/11SWIB/MDM2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein
LOC_Os12g32320NANA12+19476984..19482240expressed protein
LOC_Os12g32330OsAffx.19931.1.S1_at11/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.12972.1.S1_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.10482.1.S1_x_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7765.1.S1_at--683--5871Chr12:19463905..19463929 (25 bp)
GAGCGGGATCATGAAGCCGAAGCCC
LOC_Os12g32280
OsAffx.7765.1.S1_at--396--9151Chr12:19463837..19463861 (25 bp)
TGCCCAGGACGGAGGCGCTCAAGAT
LOC_Os12g32280
OsAffx.7765.1.S1_at--784--4131Chr12:19463822..19463846 (25 bp)
CGCTCAAGATCATCTGGGCGCACAT
LOC_Os12g32280
OsAffx.7765.1.S1_at--288--491Chr12:19463811..19463835 (25 bp)
ATCTGGGCGCACATCAAGGGCAACA
LOC_Os12g32280
OsAffx.7765.1.S1_at--875--2611Chr12:19459781..19460195 (25 bp)
AACCTCCAGGATCCGAACAACAAGA
NONE
OsAffx.7765.1.S1_at--9--6471Chr12:19459755..19459779 (25 bp)
GATAATTGTGTGTGACGAGAAACTG
NONE
OsAffx.7765.1.S1_at--1064--1071Chr12:19459716..19459740 (25 bp)
AGGGCGTGATCGTGTTGGATTTCTT
NONE
OsAffx.7765.1.S1_at--337--191Chr12:19459698..19459722 (25 bp)
ATTTCTTGAAATCTCTGGGTTACTC
NONE
OsAffx.7765.1.S1_at--813--3051Chr12:19459689..19459713 (25 bp)
AATCTCTGGGTTACTCAATCCTCAT
NONE
OsAffx.7765.1.S1_at--900--6771Chr12:19459680..19459704 (25 bp)
GTTACTCAATCCTCATTTCCAGAAA
NONE
OsAffx.7765.1.S1_at--893--5691Chr12:19459613..19459637 (25 bp)
GACTTTTATCAGTATCTTTAGCTAA
NONE
Target Sequence 
GAGCGGGATCATGAAGCCGAAGCCCATCTCCGCCGAGCTGCGGGAGTTCGTCGGCGGCGCGGAGGAGCTGCCCAGGACGG
AGGCGCTCAAGATCATCTGGGCGCACATCAAGGGCAACAACCTCCAGGATCCGAACAACAAGAAGATAATTGTGTGTGAC
GAGAAACTGAAGAAGATATTTGGAGGGCGTGATCGTGTTGGATTTCTTGAAATCTCTGGGTTACTCAATCCTCATTTCCA
GAAATGACAGCATTTATGTAAATCTTGCTCTTTTTGTATTAGCTGTGACTTTTATCAGTATCTTTAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis