Browse Element(s) Details


OsAffx.7824.1.S1_s_at

Description tigr:9640.m03688
TID=OsAffx.7824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3793910/11UNC93 homolog A, putative, expressed
LOC_Os05g453401/11DNA polymerase III, delta subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37960Os.21433.1.S1_at11/1112+23284584..23289908Diaminopimelate epimerase, putative, expressed
LOC_Os12g37970Os.11638.1.S1_at11/1112+23292073..23293502myb family transcription factor, putative, expressed
LOC_Os12g37980OsAffx.32076.1.S1_x_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37980OsAffx.32076.1.S1_at11/1112+23304643..23311305Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7824.1.S1_s_at--396--7211NONE
GTCCCCTCCTGGCAACGAAAAGAAG
NONE
OsAffx.7824.1.S1_s_at--447--1171Chr12:23280285..23280309 (25 bp)
AGTAGAGTGACCGAGCTGAAAGCCT
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--149--5551Chr12:23280260..23280284 (25 bp)
GAAACGCAACGATCTGATTCATCTG
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--92--5352Chr05:26222611..26222631 (21 bp)
GAAGTTCTGAACATGCATTGCCCAC
LOC_Os05g45340
OsAffx.7824.1.S1_s_at--1006--4091Chr12:23280201..23280225 (25 bp)
CGACTGCCAAGTTGCCGACCAGAAG
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--309--5411Chr12:23280180..23280204 (25 bp)
GAAGCTGCAGCATTTTGCACCAAGA
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--343--7991Chr12:23280149..23280173 (25 bp)
GGATGAATCCGAGCTGAAACTTTTG
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--877--3631Chr12:23280130..23280154 (25 bp)
CTTTTGGCTCAAACGGGCGACGAAT
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--199--471Chr12:23280076..23280100 (25 bp)
ATCTCGTCGGCAGCTGATGGTTTAG
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--247--6531Chr12:23280009..23280033 (25 bp)
GATTTGATCAGATGCGTCACCTGAC
LOC_Os12g37939
OsAffx.7824.1.S1_s_at--983--6311Chr12:23279939..23279963 (25 bp)
GATGCGATTAACTATTTAGCTCCAA
LOC_Os12g37939
Target Sequence 
GTCCCCTCCTGGCAACGAAAAGAAGTAGAGTGACCGAGCTGAAAGCCTGAAACGCAACGATCTGATTCATCTGAAGTTCT
GAACATGCATTGCCCACTGCCAACTGCCGACTGCCAAGTTGCCGACCAGAAGCTGCAGCATTTTGCACCAAGAAAGTAAG
GATGAATCCGAGCTGAAACTTTTGGCTCAAACGGGCGACGAATCCGGAGCAAATTATCATCAGAGTAGGATAATCTCGTC
GGCAGCTGATGGTTTAGTTTTTTTGTTGGAGAGGCAGATGGTTTAATTAGTAGTTCCATGATTTGATCAGATGCGTCACC
TGACAAAGAAGATCCCCCAAATTGTATGATACTGCTTGAGCTGCAAATGGATGCGATTAACTATTTAGCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7824.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis