Browse Element(s) Details


OsAffx.7831.1.S1_at

Description tigr:9640.m03739
TID=OsAffx.7831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Exostosin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3845011/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38410OsAffx.32083.3.S1_x_at11/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_x_at9/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_at6/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.2.S1_x_at2/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.4.S1_x_at1/1112+23542601..23546356hypothetical protein
LOC_Os12g38420Os.6211.1.S1_at11/1112+23550623..23551541expressed protein
LOC_Os12g38430Os.6211.1.S1_at11/1112+23556107..23559945RNA recognition motif family protein, expressed
LOC_Os12g38440Os.37689.1.S1_at11/1112+23562565..23566673XH domain containing protein, expressed
LOC_Os12g38450OsAffx.7831.1.S1_at11/1112+23569296..23570876Exostosin family protein, expressed
LOC_Os12g38460OsAffx.20011.1.S1_at10/1112+23572909..23577850RNA recognition motif family protein
LOC_Os12g38470OsAffx.20012.1.S1_at11/1112+23581659..23582114hypothetical protein
LOC_Os12g38480Os.23924.2.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38480Os.23924.1.S1_at11/1112+23583542..23590522expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7831.1.S1_at--370--8011Chr12:23570383..23570407 (25 bp)
GGAGGCGCGACGACTGCTACGACCC
LOC_Os12g38450
OsAffx.7831.1.S1_at--574--1911Chr12:23570413..23570437 (25 bp)
ACGTGATGCGGCTGTTCAAGAGCGC
LOC_Os12g38450
OsAffx.7831.1.S1_at--968--9131Chr12:23570419..23570443 (25 bp)
TGCGGCTGTTCAAGAGCGCTGCCTT
LOC_Os12g38450
OsAffx.7831.1.S1_at--599--8791Chr12:23570425..23570449 (25 bp)
TGTTCAAGAGCGCTGCCTTCTGCCT
LOC_Os12g38450
OsAffx.7831.1.S1_at--410--1151Chr12:23570548..23570572 (25 bp)
AGTACCGGTGGCACCTGCCGCGGGA
LOC_Os12g38450
OsAffx.7831.1.S1_at--470--411Chr12:23570691..23570715 (25 bp)
ATCAGGATGATACCCACCGTCGTGT
LOC_Os12g38450
OsAffx.7831.1.S1_at--895--6471Chr12:23570699..23570723 (25 bp)
GATACCCACCGTCGTGTACAGGGAC
LOC_Os12g38450
OsAffx.7831.1.S1_at--854--9451Chr12:23570736..23570760 (25 bp)
TCGGCCCGCGGGTTCACGGACGCAA
LOC_Os12g38450
OsAffx.7831.1.S1_at--844--4651Chr12:23570743..23570767 (25 bp)
GCGGGTTCACGGACGCAATCGACGT
LOC_Os12g38450
OsAffx.7831.1.S1_at--708--7771Chr12:23570746..23570770 (25 bp)
GGTTCACGGACGCAATCGACGTCGC
LOC_Os12g38450
OsAffx.7831.1.S1_at--947--971Chr12:23570796..23570820 (25 bp)
AGGAGGATCAAGCAAGGGCTCCCTC
LOC_Os12g38450
Target Sequence 
GGAGGCGCGACGACTGCTACGACCCGGGGAACGTGATGCGGCTGTTCAAGAGCGCTGCCTTCTGCCTCCAGCCGCGGGGG
GACTCGTACACGCGGCGGTCGGTGTTCGACGCCATCCTCGCCGGCTGCGTGCCGGTGTTCTTCCACCCGGGCTCCGCCTA
CACCCAGTACCGGTGGCACCTGCCGCGGGACCACGCCGCCTACTCGGTGTTCGTCCCGGAGGACGGCGTGCGCAACGGCA
CGGTGAGGCTGGAGGACGTGCTCCGGCGGGTGAGCGCGGCGAGGGTGGCGGCGATGAGGGAGCAGGTGATCAGGATGATA
CCCACCGTCGTGTACAGGGACCCCCGGGCGCCGTCGGCCCGCGGGTTCACGGACGCAATCGACGTCGCCGTCGACGGCGT
CATCGAGAGGGTCAGGAGGATCAAGCAAGGGCTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis