Browse Element(s) Details


OsAffx.7857.1.S1_at

Description tigr:9640.m04103
TID=OsAffx.7857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=modification methylase, HemK family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4183011/11modification methylase, HemK family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os12g41830OsAffx.7857.1.S1_at11/1112+25879339..25881031modification methylase, HemK family protein, expressed
LOC_Os12g41840OsAffx.32145.1.S1_at11/1112+25882716..25884226preprotein translocase, SecY subunit containing protein
LOC_Os12g41850OsAffx.32146.2.S1_at10/1112+25884957..25886877expressed protein
LOC_Os12g41860Os.32984.1.S1_at11/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed
LOC_Os12g41860Os.56258.1.S1_at1/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7857.1.S1_at--1085--1051Chr12:25880398..25880422 (25 bp)
AGGGTGTTCGCCACTGATGTCAGCG
LOC_Os12g41830
OsAffx.7857.1.S1_at--528--1631Chr12:25880377..25880401 (25 bp)
AGCGAGGTCGCCATTGACGTAGCTC
LOC_Os12g41830
OsAffx.7857.1.S1_at--354--6971Chr12:25880359..25880383 (25 bp)
GTAGCTCGGCTCAACGTTCAGAGAT
LOC_Os12g41830
OsAffx.7857.1.S1_at--152--7871Chr12:25880171..25880195 (25 bp)
GGTTTGAGCCTCTAGAAGATCTGAA
LOC_Os12g41830
OsAffx.7857.1.S1_at--1096--7031Chr12:25880123..25880147 (25 bp)
GTAACCCTCCATATATACCAACTGA
LOC_Os12g41830
OsAffx.7857.1.S1_at--710--2551Chr12:25880104..25880128 (25 bp)
AACTGAAGATCTACCTGGCCTGCAA
LOC_Os12g41830
OsAffx.7857.1.S1_at--481--3291Chr12:25880057..25880081 (25 bp)
CAAAGCTGGCACTTGATGGAGGCAA
LOC_Os12g41830
OsAffx.7857.1.S1_at--693--8911Chr12:25880023..25880047 (25 bp)
TGAGCATCTGCTTCATCTTTGTGAA
LOC_Os12g41830
OsAffx.7857.1.S1_at--297--7011Chr12:25879986..25880010 (25 bp)
GTACTTAAGCCTGGTGGTTTCTTTG
LOC_Os12g41830
OsAffx.7857.1.S1_at--620--7111Chr12:25879429..25879453 (25 bp)
GTCAGAGTTTCTTGTCGATTTCATA
LOC_Os12g41830
OsAffx.7857.1.S1_at--46--5711Chr12:25879402..25879426 (25 bp)
GACTAAGTGGGATTCTTCTTTTCGT
LOC_Os12g41830
Target Sequence 
AGGGTGTTCGCCACTGATGTCAGCGAGGTCGCCATTGACGTAGCTCGGCTCAACGTTCAGAGATACGGGATGCAGGATAA
AGTTGAGATAAGGCATGGCTCATGGTTTGAGCCTCTAGAAGATCTGAAGGGAAAGCTCATGGGTGTGATTAGTAACCCTC
CATATATACCAACTGAAGATCTACCTGGCCTGCAACCTGAAGTTGGGTGGCATGAACCAAAGCTGGCACTTGATGGAGGC
AAAGATGGACTTGAGCATCTGCTTCATCTTTGTGAAGGATTGTCATCAGTACTTAAGCCTGGTGGTTTCTTTGTTTTTGA
GACAAACGGCAACAAACAGTCAGAGTTTCTTGTCGATTTCATACAGACTAAGTGGGATTCTTCTTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis