Browse Element(s) Details


OsAffx.7870.1.S1_at

Description tigr:9640.m04187
TID=OsAffx.7870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4262011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed
LOC_Os12g42620OsAffx.7870.1.S1_at11/1112+26456780..26457028hypothetical protein
LOC_Os12g42630Os.57031.1.A1_at11/1112+26464577..26465743transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g42640Os.53965.1.S1_at11/1112+26467261..26470961retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g42650Os.51828.2.S1_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650OsAffx.32161.1.S1_x_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650Os.51828.2.S1_x_at5/1112+26472677..26473582expressed protein
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed
LOC_Os12g42670Os.55154.1.S1_at11/1112+26480253..26481031expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7870.1.S1_at--478--4311Chr12:26456947..26456971 (25 bp)
GCCTTCCAAGGACACTGGTTCTGCG
LOC_Os12g42620
OsAffx.7870.1.S1_at--759--3631Chr12:26456945..26456969 (25 bp)
CTTCCAAGGACACTGGTTCTGCGCA
LOC_Os12g42620
OsAffx.7870.1.S1_at--368--2931Chr12:26456940..26456964 (25 bp)
AAGGACACTGGTTCTGCGCACCGGC
LOC_Os12g42620
OsAffx.7870.1.S1_at--1110--8131Chr12:26456938..26456962 (25 bp)
GGACACTGGTTCTGCGCACCGGCAT
LOC_Os12g42620
OsAffx.7870.1.S1_at--223--5091Chr12:26456923..26456947 (25 bp)
GCACCGGCATCACTCCTGAGGATGG
LOC_Os12g42620
OsAffx.7870.1.S1_at--432--7971Chr12:26456891..26456915 (25 bp)
GGATCCGCCACGAGGCCACTGGATT
LOC_Os12g42620
OsAffx.7870.1.S1_at--1107--1871Chr12:26456882..26456906 (25 bp)
ACGAGGCCACTGGATTCGCGCACTA
LOC_Os12g42620
OsAffx.7870.1.S1_at--1011--871Chr12:26456879..26456903 (25 bp)
AGGCCACTGGATTCGCGCACTAGCG
LOC_Os12g42620
OsAffx.7870.1.S1_at--547--1931Chr12:26456874..26456898 (25 bp)
ACTGGATTCGCGCACTAGCGCCGCT
LOC_Os12g42620
OsAffx.7870.1.S1_at--1111--7911Chr12:26456871..26456895 (25 bp)
GGATTCGCGCACTAGCGCCGCTCGT
LOC_Os12g42620
OsAffx.7870.1.S1_at--605--4211Chr12:26456838..26456862 (25 bp)
CCGCCATCTCCGCTAGGAAGTGGAG
LOC_Os12g42620
Target Sequence 
GCCTTCCAAGGACACTGGTTCTGCGCACCGGCATCACTCCTGAGGATGGGGGCGTCGGATCCGCCACGAGGCCACTGGAT
TCGCGCACTAGCGCCGCTCGTCCCTGAGGCCGCCATCTCCGCTAGGAAGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis