Browse Element(s) Details


Os.49823.1.S1_at

Description gb:AK111785.1
DB_XREF= gi:37988448
TID=Os.49823.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089N11, full insert sequence.
FL= gb:AK111785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4266010/11incomplete root hair elongation, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed
LOC_Os12g42620OsAffx.7870.1.S1_at11/1112+26456780..26457028hypothetical protein
LOC_Os12g42630Os.57031.1.A1_at11/1112+26464577..26465743transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g42640Os.53965.1.S1_at11/1112+26467261..26470961retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g42650Os.51828.2.S1_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650OsAffx.32161.1.S1_x_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650Os.51828.2.S1_x_at5/1112+26472677..26473582expressed protein
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed
LOC_Os12g42670Os.55154.1.S1_at11/1112+26480253..26481031expressed protein
LOC_Os12g42680NANA12+26484222..26490180retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_x_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42700Os.53603.1.S1_at11/1112+26496675..26502438expressed protein
LOC_Os12g42700Os.2822.1.S1_at1/1112+26496675..26502438expressed protein
LOC_Os12g42710Os.52352.1.S1_at2/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53603.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53658.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.25305.1.A1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49823.1.S1_at--17--5391Chr12:26479179..26479203 (25 bp)
GAAGAATTCGGAGCTCCATCACTGT
LOC_Os12g42660
Os.49823.1.S1_at--542--5491Chr12:26479320..26479344 (25 bp)
GAACATTTCTCAGTTAGCATCCATG
LOC_Os12g42660
Os.49823.1.S1_at--112--6171Chr12:26479372..26479396 (25 bp)
GAGGATCCCCTACAGTCTTCAAAAT
LOC_Os12g42660
Os.49823.1.S1_at--732--431NONE
ATCTTGAGTGTATGCACTCCCTCGA
NONE
Os.49823.1.S1_at--1041--1071Chr12:26479555..26479579 (25 bp)
AGTGAACTCCCACAGTTTTGCTACA
LOC_Os12g42660
Os.49823.1.S1_at--210--3131Chr12:26479611..26479635 (25 bp)
AATTTCCTCGGCAAGACTGGTTCAA
LOC_Os12g42660
Os.49823.1.S1_at--315--10591Chr12:26479646..26479670 (25 bp)
TTCTCTTCAGTTTCTCTCCAGTGAG
LOC_Os12g42660
Os.49823.1.S1_at--571--3291Chr12:26479671..26479695 (25 bp)
CAAAGAGGTGCATTTCTTCATGGCA
LOC_Os12g42660
Os.49823.1.S1_at--931--2951Chr12:26479754..26479778 (25 bp)
AATGGCACCCACTGTTTTGGCAAAA
LOC_Os12g42660
Os.49823.1.S1_at--688--991Chr12:26479780..26479804 (25 bp)
AGGTATACCTTTCTCAAAACTTGTG
LOC_Os12g42660
Os.49823.1.S1_at--155--10231Chr12:26479919..26479943 (25 bp)
TATTGCTGTTGAGACCCATTACTAG
LOC_Os12g42660
Target Sequence 
GAAGAATTCGGAGCTCCATCACTGTCAGTGAAATATTCTTTCAGCATTTTCTCATTCAAGAACATTTCTCAGTTAGCATC
CATGAACTATGATCTGATCACAAAGCATAACGAGGATCCCCTACAGTCTTCAAAATCTTGAGTGTATGCACTCCCTCGAC
ATGGCAGGCTGCAGGAAGGAGCTTCCTCAACAGTGAACTCCCACAGTTTTGCTACAATGGTTTGGTCGATGACAAATTGA
TAATAGGAATTTCCTCGGCAAGACTGGTTCAAGTAATTTTTTTTCTCTTCAGTTTCTCTCCAGTGAGCAAAGAGGTGCAT
TTCTTCATGGCAAATGCAATCTGTAATCATTGAAGAAGAATGGATAGGTAGCACAGGAATCATAGGAAAGAATGGCACCC
ACTGTTTTGGCAAAATAGGTATACCTTTCTCAAAACTTGTGAGTGGTGCAAGATTAAGTTGTTTGGTACTTTGGTGCAGT
GTTTTTTTGCATCAATAGTAGAAAAAAAAGTTTATAGCATATTTTACCCTATTGTATTTATTCTCATATTTATTTTATTG
CTGTTGAGACCCATTACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis