Browse Element(s) Details


Os.53603.1.S1_at

Description gb:AK073528.1
DB_XREF= gi:32983551
TID=Os.53603.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044P17, full insert sequence.
FL= gb:AK073528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4270011/11expressed protein
LOC_Os12g427101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42650Os.51828.2.S1_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650OsAffx.32161.1.S1_x_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650Os.51828.2.S1_x_at5/1112+26472677..26473582expressed protein
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed
LOC_Os12g42670Os.55154.1.S1_at11/1112+26480253..26481031expressed protein
LOC_Os12g42680NANA12+26484222..26490180retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_x_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42700Os.53603.1.S1_at11/1112+26496675..26502438expressed protein
LOC_Os12g42700Os.2822.1.S1_at1/1112+26496675..26502438expressed protein
LOC_Os12g42710Os.52352.1.S1_at2/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53603.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53658.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.25305.1.A1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720Os.2741.4.S1_x_at2/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720OsAffx.17756.1.S1_x_at1/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42730Os.26784.1.S1_a_at11/1112+26514861..26522352Mov34/MPN/PAD-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53603.1.S1_at--410--5251Chr12:26501849..26501873 (25 bp)
GAATCATTGGGCATCCCTGAGGCCA
LOC_Os12g42700
Os.53603.1.S1_at--534--6092Chr12:26503138..26503162 (25 bp)
GAGTACATCGCATACACAACGGTGT
LOC_Os12g42710
Os.53603.1.S1_at--671--2191Chr12:26501948..26501972 (25 bp)
ACAACGGTGTGAGCTACAACGCAAC
LOC_Os12g42700
Os.53603.1.S1_at--513--5171Chr12:26501995..26502019 (25 bp)
GCAAGACAAGTACTCCTATTCCAGT
LOC_Os12g42700
Os.53603.1.S1_at--996--5071Chr12:26502025..26502049 (25 bp)
GCAGCCACTTTTGATGTTCTACGAC
LOC_Os12g42700
Os.53603.1.S1_at--800--7671Chr12:26502059..26502083 (25 bp)
GGGTTCTATCTGGTTGAGCTCCTCC
LOC_Os12g42700
Os.53603.1.S1_at--242--5191Chr12:26502174..26502198 (25 bp)
GCAAGGCAATGTGTCCAGTATCTGG
LOC_Os12g42700
Os.53603.1.S1_at--750--10751Chr12:26502304..26502328 (25 bp)
TTGACAGTGCATCCTTCGATGACTG
LOC_Os12g42700
Os.53603.1.S1_at--972--7351Chr12:26502364..26502388 (25 bp)
GTGACTCTTTTATGGCGTTCTCTGC
LOC_Os12g42700
Os.53603.1.S1_at--290--7131Chr12:26502390..26502414 (25 bp)
GTCATCCTCTCTAGTCTGCAAGATA
LOC_Os12g42700
Os.53603.1.S1_at--652--3091Chr12:26502414..26502438 (25 bp)
AATTGCGCTTGATCTTTAACGTTGC
LOC_Os12g42700
Target Sequence 
GAATCATTGGGCATCCCTGAGGCCACATTGGTTCCCTCCTTGCGATCTGCATCTTCTCTGCGGCGCCTCAGCTACAAGGA
TGGCGAGTACATCGCATACACAACGGTGTGAGCTACAACGCAACACCTCGAAGCCATAGCTGGGAAGCAAGACAAGTACT
CCTATTCCAGTNAAGTGCAGCCACTTTTGATGTTCTACGACTACCAATGGGGGTTCTATCTGGTTGAGCTCCTCCCGTCA
AGAAGCCTCAATGCCTCGTCCATGAGACAAGCNAGGCAGGCAGGCAGAGAAGCTGTNAGCTGCTGCTGGTTTTGTGGTTT
TTTTTGCAAGGCAATGTGTCCAGTATCTGGAATCATCTAACTGTTTTNGGGTGAGCCTGTAGATTATCTACAGNACAATG
ANNNNCTCTTGAATGGTGCAGTAATTTATGGGATTGTACAGTGTATTTGATGCCCTTGACAGTGCATCCTTCGATGACTG
ATGGGGGGGGGGGGGGGGTAGTGAGGAGGGGGAAGTGACTCTTTTATGGCGTTCTCTGCTGTCATCCTCTCTAGTCTGCA
AGATAATTGCGCTTGATCTTTAACGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis