Browse Element(s) Details


Os.26784.1.S1_a_at

Description gb:AK068389.1
DB_XREF= gi:32978407
TID=Os.26784.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146P10, full insert sequence.
FL= gb:AK068389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4273011/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42680NANA12+26484222..26490180retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_x_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42700Os.53603.1.S1_at11/1112+26496675..26502438expressed protein
LOC_Os12g42700Os.2822.1.S1_at1/1112+26496675..26502438expressed protein
LOC_Os12g42710Os.52352.1.S1_at2/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53603.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53658.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.25305.1.A1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720Os.2741.4.S1_x_at2/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720OsAffx.17756.1.S1_x_at1/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42730Os.26784.1.S1_a_at11/1112+26514861..26522352Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42750Os.20602.2.S1_x_at11/1112+26529396..26531016hAT family dimerisation domain containing protein
LOC_Os12g42760Os.14561.1.S1_at11/1112+26544405..26547383Type IIB DNA topoisomerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26784.1.S1_a_at--1152--5111Chr12:26521090..26521114 (25 bp)
GCAAAGTTTAACTCATGAGCCTTAT
LOC_Os12g42730
Os.26784.1.S1_a_at--1043--8911Chr12:26521105..26521129 (25 bp)
TGAGCCTTATCTTCCACTAAGCAAG
LOC_Os12g42730
Os.26784.1.S1_a_at--1027--51Chr12:26521959..26521983 (25 bp)
ATTGACTTCATAATTGCAGCTCCTG
LOC_Os12g42730
Os.26784.1.S1_a_at--787--2391Chr12:26521985..26522009 (25 bp)
AAACAGAAGCCGGACGCTATCGTTC
LOC_Os12g42730
Os.26784.1.S1_a_at--179--8391Chr12:26522014..26522038 (25 bp)
GGCGCATCGAGGCAGCTTCTATTGA
LOC_Os12g42730
Os.26784.1.S1_a_at--264--931Chr12:26522023..26522047 (25 bp)
AGGCAGCTTCTATTGATGATTCTCC
LOC_Os12g42730
Os.26784.1.S1_a_at--345--8771Chr12:26522078..26522102 (25 bp)
TGTTTCGTTGTTGAAGCGTCTTCGT
LOC_Os12g42730
Os.26784.1.S1_a_at--136--2571Chr12:26522114..26522138 (25 bp)
AACTGTTTGTTGTCTAGGATGTGCA
LOC_Os12g42730
Os.26784.1.S1_a_at--693--991Chr12:26522129..26522153 (25 bp)
AGGATGTGCAGTTGCTCTTTACCCT
LOC_Os12g42730
Os.26784.1.S1_a_at--329--10471Chr12:26522147..26522171 (25 bp)
TTACCCTTTCTACCGCAGAGTATGA
LOC_Os12g42730
Os.26784.1.S1_a_at--197--2091Chr12:26522212..26522236 (25 bp)
ACATATTCTCTGACCTGCTTGATTA
LOC_Os12g42730
Target Sequence 
GCAAAGTTTAACTCATGAGCCTTATCTTCCACTAAGCAAGGCAATGTCTAAGCAGATAAAAGAATATGGGTTCAAAATCT
CGCCACGAGAGATTGACAGAGAGTTCCTAAGAGCTATGAGTTTTTTAAATTATTTGGGGTATATGTCAGAGCGTTATTCA
CTGCTGCTAGATCATTTGTTTGGACAATATCGTAAGAATAATATGTCCGACATTGAATTTGCTAAATCAATTGCATCTCA
TCTTCATTCCTCTGAGGGAATTGTACCAAGAGATGAGAGATACACTAGAGCAGAGATTATGGAGTTCATTGACTTCATAA
TTGCAGCTCCTGAAAACAGAAGCCGGACGCTATCGTTCCTGCGGCGCATCGAGGCAGCTTCTATTGATGATTCTCCTCCA
CCGCCTTCACTGTCAGGAGGGATGGGTGTTTCGTTGTTGAAGCGTCTTCGTTTGGATTGGATAACTGTTTGTTGTCTAGG
ATGTGCAGTTGCTCTTTACCCTTTCTACCGCAGAGTATGAATGACTTTGTTATAAAATTCACTATGTTTTGAGGACAAAT
ACATATTCTCTGACCTGCTTGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26784.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis