Browse Element(s) Details


Os.25305.1.A1_at

Description gb:CB669471
DB_XREF= gi:29673196
DB_XREF=OSJNEe01P17.r
CLONE=OSJNEe01P17
TID=Os.25305.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25305 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g427101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed
LOC_Os12g42670Os.55154.1.S1_at11/1112+26480253..26481031expressed protein
LOC_Os12g42680NANA12+26484222..26490180retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_x_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42700Os.53603.1.S1_at11/1112+26496675..26502438expressed protein
LOC_Os12g42700Os.2822.1.S1_at1/1112+26496675..26502438expressed protein
LOC_Os12g42710Os.52352.1.S1_at2/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53603.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53658.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.25305.1.A1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720Os.2741.4.S1_x_at2/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720OsAffx.17756.1.S1_x_at1/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42730Os.26784.1.S1_a_at11/1112+26514861..26522352Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42750Os.20602.2.S1_x_at11/1112+26529396..26531016hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25305.1.A1_at--821--2011Chr09:753234..753258 (25 bp)
ACTACACAAATCAATGCAATTTGGA
NONE
Os.25305.1.A1_at--1029--10211Chr09:753268..753292 (25 bp)
TTTGGTTAATATTCAGTAAATGCAT
NONE
Os.25305.1.A1_at--634--3451Chr09:753281..753305 (25 bp)
CAGTAAATGCATTAAGTGTCATGTT
NONE
Os.25305.1.A1_at--146--1111Chr09:753295..753319 (25 bp)
AGTGTCATGTTATACATAGGTCTAA
NONE
Os.25305.1.A1_at--375--1032Chr12:26503744..26503765 (22 bp)
AGGTCTAATGATATCCATTGTTTCG
LOC_Os12g42710
Os.25305.1.A1_at--493--6511Chr09:753321..753345 (25 bp)
GATATCCATTGTTTCGTGATGCTGT
NONE
Os.25305.1.A1_at--671--571Chr09:753324..753348 (25 bp)
ATCCATTGTTTCGTGATGCTGTACA
NONE
Os.25305.1.A1_at--59--3611Chr09:753327..753351 (25 bp)
CATTGTTTCGTGATGCTGTACAGGC
NONE
Os.25305.1.A1_at--293--10791Chr09:753329..753353 (25 bp)
TTGTTTCGTGATGCTGTACAGGCGT
NONE
Os.25305.1.A1_at--392--10291Chr09:753332..753356 (25 bp)
TTTCGTGATGCTGTACAGGCGTACT
NONE
Os.25305.1.A1_at--1063--8851Chr09:753337..753361 (25 bp)
TGATGCTGTACAGGCGTACTCCAAA
NONE
Target Sequence 
ACTACACAAATCAATGCAATTTGGAATTTAATTATTTGGTTAATATTCAGTAAATGCATTAAGTGTCATGTTATACATAG
GTCTAATGATATCCATTGTTTCGTGATGCTGTACAGGCGTACTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25305.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis