Browse Element(s) Details


Os.52352.1.S1_at

Description gb:AK066577.1
DB_XREF= gi:32976595
TID=Os.52352.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069I21, full insert sequence.
FL= gb:AK066577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g427102/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed
LOC_Os12g42670Os.55154.1.S1_at11/1112+26480253..26481031expressed protein
LOC_Os12g42680NANA12+26484222..26490180retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_x_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42700Os.53603.1.S1_at11/1112+26496675..26502438expressed protein
LOC_Os12g42700Os.2822.1.S1_at1/1112+26496675..26502438expressed protein
LOC_Os12g42710Os.52352.1.S1_at2/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53603.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.53658.1.S1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42710Os.25305.1.A1_at1/1112+26503078..26505525retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720Os.2741.4.S1_x_at2/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42720OsAffx.17756.1.S1_x_at1/1112+26509863..26515155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g42730Os.26784.1.S1_a_at11/1112+26514861..26522352Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42750Os.20602.2.S1_x_at11/1112+26529396..26531016hAT family dimerisation domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52352.1.S1_at--992--8931Chr09:752861..752885 (25 bp)
TGACTGCCAATGCTTTACCCACTTT
NONE
Os.52352.1.S1_at--759--571Chr09:752870..753356 (25 bp)
ATGCTTTACCCACTTTAGGCGTACT
NONE
Os.52352.1.S1_at--451--111Chr09:753597..753893 (25 bp)
ATTCTTCAAATCCAACCCTCCATGG
NONE
Os.52352.1.S1_at--189--3031Chr09:753605..753901 (25 bp)
AATCCAACCCTCCATGGAATCAAAC
NONE
Os.52352.1.S1_at--321--853Chr12:26504318..26504342 (25 bp)
ATGGAATCAAACTCCTCACCTGCTA
LOC_Os12g42710
Os.52352.1.S1_at--651--9672Chr12:26504333..26504355 (23 bp)
TCACCTGCTAGCCACAGCTCAAAAG
LOC_Os12g42710
Os.52352.1.S1_at--1093--751Chr09:754069..754093 (25 bp)
ATGTCTTGATCAGAAGTCCGGTGTG
NONE
Os.52352.1.S1_at--178--1471Chr09:754080..754104 (25 bp)
AGAAGTCCGGTGTGCATACTTTCTT
NONE
Os.52352.1.S1_at--747--4251Chr09:754086..754110 (25 bp)
CCGGTGTGCATACTTTCTTGTGGTA
NONE
Os.52352.1.S1_at--273--2051Chr09:754097..754121 (25 bp)
ACTTTCTTGTGGTATACTGGTCTTA
NONE
Os.52352.1.S1_at--1051--7852Chr09:754107..754131 (25 bp)
GGTATACTGGTCTTAGGAATTTGAT
NONE
Target Sequence 
TGACTGCCAATGCTTTACCCACTTTAGGCGTACTCCAAAAAAGTAACATTTGGTGTTGAAGAATGTGGTTGCCGTTATGT
TGCTTGAGTGTTTTGAAGTTGGATAATTAAGCTCCTAAATGTTTTTTACACTATTGTCTTTATTATACTGAATTAAAAAC
TTAAAATGTTCTTGAATAGGACATGCACGGATTGGGGATTTCTATTCATGGAGTAACAATATCTTTATTGTACTTTTGTG
TGGGCACAGGGGAGTGTGGAGTTGCTGTCGTGGCATTCTTCAAATCCAACCCTCCATGGAATCAAACTCCTCACCTGCTA
GCCACAGCTCAAAAGCTGGTGCGTTGGTTTTCTCCCATGTAGAAAATACAGAATTTTCTTATTACATTTCATTGTTTGTT
GACGACCGACATTTCCATTGTTGCCGAGAACAACATCTACGGTTTGCATGTGTACTCGCAATTCCTCCTTGAAAATGTCT
TGATCAGAAGTCCGGTGTGCATACTTTCTTGTGGTATACTGGTCTTAGGAATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis