Browse Element(s) Details


OsAffx.32161.1.S1_x_at

Description tigr:9640.m04190
TID=OsAffx.32161.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed
LOC_Os12g42620OsAffx.7870.1.S1_at11/1112+26456780..26457028hypothetical protein
LOC_Os12g42630Os.57031.1.A1_at11/1112+26464577..26465743transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g42640Os.53965.1.S1_at11/1112+26467261..26470961retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g42650Os.51828.2.S1_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650OsAffx.32161.1.S1_x_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650Os.51828.2.S1_x_at5/1112+26472677..26473582expressed protein
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed
LOC_Os12g42670Os.55154.1.S1_at11/1112+26480253..26481031expressed protein
LOC_Os12g42680NANA12+26484222..26490180retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_x_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42700Os.53603.1.S1_at11/1112+26496675..26502438expressed protein
LOC_Os12g42700Os.2822.1.S1_at1/1112+26496675..26502438expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32161.1.S1_x_at--905--1031Chr12:26473333..26473357 (25 bp)
AGGTCGCCGGCCGTGGAGATGAGGC
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--804--1131Chr12:26473236..26473260 (25 bp)
AGTGCGCCGCGGTGTTCTGCTGCTT
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--1034--9151Chr12:26473234..26473258 (25 bp)
TGCGCCGCGGTGTTCTGCTGCTTCC
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--405--7251Chr12:26473117..26473141 (25 bp)
GTCCGCTCCACGAAGCCGAAGGAGA
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--520--5991Chr12:26473096..26473120 (25 bp)
GAGACGGGCGCCATGGACATCGCCT
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--380--891Chr12:26473002..26473026 (25 bp)
AGGCCGAACACCTCGTTGACATGGA
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--1097--2471Chr12:26472996..26473020 (25 bp)
AACACCTCGTTGACATGGAGAAGGA
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--892--8491Chr12:26472940..26472964 (25 bp)
TGGAGGAGCCCCTCACAACGAGAGG
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--317--8091Chr12:26472936..26472960 (25 bp)
GGAGCCCCTCACAACGAGAGGACAG
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--247--1331Chr12:26472920..26472944 (25 bp)
AGAGGACAGGAGGTGCATCGCCGCC
LOC_Os12g42650
OsAffx.32161.1.S1_x_at--582--9671Chr12:26472855..26472879 (25 bp)
TCACCACGGTTGTTGGTTTCTTGGC
LOC_Os12g42650
Target Sequence 
AGGTCGCCGGCCGTGGAGATGAGGCGGGAGCGGGAGCGGCGGCGGGCGCGGGAGCAGCAGCCGCGGTGCGGGGAGGTGGC
GGGCGGGACGGCGGCGGAGTGCGCCGCGGTGTTCTGCTGCTTCCCCTTCGCCGTCGTCGAGCTCGTCGTCCTCGCGGCCG
TCCGCGCTCCCGCCGCGCTCTGCCGCCGCGCCGTCCGCGGTGGGCGCCGACGCCGCGTCCGCTCCACGAAGCCGAAGGAG
ACGGGCGCCATGGACATCGCCTCCCCGAGGTCGCTGGCCGCCGCGGCCGCCAAGGCCAGGAAGGTGGACGCCGATTTCCC
GGCCACGCCCAAGGCCGAACACCTCGTTGACATGGAGAAGGAGGTGTGGGCGAGCTTCTACGGCGGCGGCTTCTGGAGGA
GCCCCTCACAACGAGAGGACAGGAGGTGCATCGCCGCCGGCGACGGCGCCGCCGCCGCCGCCCTCTTCTTCTTCTCCTTC
ACCACGGTTGTTGGTTTCTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32161.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis