Browse Element(s) Details


OsAffx.8166.1.S1_at

Description gb:NM_196290.1
DB_XREF= gi:37533939
TID=OsAffx.8166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBb0061I18.4), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g251904/11transposon protein, putative, unclassified
LOC_Os05g319301/11transposon protein, putative, unclassified
LOC_Os02g305101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g542801/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g259701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g159001/11transposon protein, putative, unclassified
LOC_Os07g111901/11transposon protein, putative, unclassified
LOC_Os06g033101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein
LOC_Os10g25190OsAffx.8166.1.S1_at4/1110+12671153..12671479transposon protein, putative, unclassified
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein
LOC_Os10g25210Os.46689.1.S1_at11/1110+12684298..12686563F-box protein interaction domain containing protein, expressed
LOC_Os10g25220Os.46688.1.S1_x_at9/1110+12687132..12691819SAP domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8166.1.S1_at--27--1379Chr12:9050259..9050278 (20 bp)
AGAGCTATTCCTTTATATTGCCGCC
LOC_Os12g15900
OsAffx.8166.1.S1_at--482--4391Chr10:12671849..12671873 (25 bp)
GCCACACCTTATTCTGTTAGTACCG
NONE
OsAffx.8166.1.S1_at--138--6791Chr10:12671834..12671858 (25 bp)
GTTAGTACCGTCATAGTTGTCGAGA
NONE
OsAffx.8166.1.S1_at--905--231Chr10:12671696..12671813 (25 bp)
ATATACTATGTCAGCGAGGCCCACA
NONE
OsAffx.8166.1.S1_at--998--2191Chr10:12671674..12671698 (25 bp)
ACAAAGTCACGGTCATCTCTTCTTT
NONE
OsAffx.8166.1.S1_at--717--5791Chr10:12671611..12671635 (25 bp)
GACGCATTGCCAAGTGGGTCATCAA
NONE
OsAffx.8166.1.S1_at--228--191Chr10:12671577..12671601 (25 bp)
ATTTAATGTCCACTTCGTTCTGAGA
NONE
OsAffx.8166.1.S1_at--235--3191Chr10:12671326..12671350 (25 bp)
GAAGGGCTACCATCCGGGTTACGAG
LOC_Os10g25190
OsAffx.8166.1.S1_at--1140--5851Chr10:12671304..12671328 (25 bp)
GAGCCGCCGTAGCACTCGGAGTAAA
LOC_Os10g25190
OsAffx.8166.1.S1_at--269--1251Chr10:12671253..12671277 (25 bp)
AGTTGGTCGCCAATCAAGTGCACAA
LOC_Os10g25190
OsAffx.8166.1.S1_at--735--1211Chr10:12671205..12671229 (25 bp)
AGTTAGCCAAATACCTCACCGATGT
LOC_Os10g25190
Target Sequence 
AGAGCTATTCCTTTATATTGCCGCCACACCTTATTCTGTTAGTACCGTCATAGTTGTCGAGAGGGACAAAGTACAACACC
CCATATACTATGTCAGCGAGGCCCACAAAGTCACGGTCATCTCTTCTTTCCCCCTATGCGAGGTGGTCAGGAACAAAGAT
GTTGTAGGACGCATTGCCAAGTGGGTCATCAAGCTTAGCCAATTTAATGTCCACTTCGTTCTGAGAACAGCTATCAAGTT
CCAGATAACGAGACATGGAAAAATGACCTTCGATAGAGCACTCAACAGCCAAAGAGCAGGGGCAGGATTTATTCTAACAT
CTCTAACTGGAGATCGGTTCAGACATGCAATACACCTCAATTTTCGAGCAACCAATAACATTGCAAAGTACGAAGGGCTA
CCATCCGGGTTACGAGCCGCCGTAGCACTCGGAGTAAAGCGATTAATTGTGAAAGGGGACTCAGAGTTGGTCGCCAATCA
AGTGCACAAGGACTACAAATGCTCCAACCCCGAGTTAGCCAAATACCTCACCGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis