Browse Element(s) Details


OsAffx.8327.1.S1_at

Description tigr:9638.m01328
TID=OsAffx.8327.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1537010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15360OsAffx.24744.4.A1_at11/1110+7819182..7819625retrotransposon protein, putative, unclassified
LOC_Os10g15370OsAffx.8327.1.S1_at10/1110+7823635..7823927expressed protein
LOC_Os10g15390Os.17285.2.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g15390Os.46706.1.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g16390NANA10+7839603..7843537retrotransposon protein, putative, unclassified
LOC_Os10g16400NANA10+7843889..7844794hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_x_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_at11/1110+7847166..7849598hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8327.1.S1_at--121--9451Chr10:7823665..7823689 (25 bp)
TCGGCTCTGAAAATGGGGCTCTGCA
LOC_Os10g15370
OsAffx.8327.1.S1_at--965--7571Chr10:7823680..7823704 (25 bp)
GGGCTCTGCATGGGCGGGCACTCCG
LOC_Os10g15370
OsAffx.8327.1.S1_at--540--4691NONE
GCGGACGCGCTCAACTTCACTGCGG
NONE
OsAffx.8327.1.S1_at--452--8111Chr10:7823815..7823838 (24 bp)
GGACGCGCTCAACTTCACTGCGGGA
LOC_Os10g15370
OsAffx.8327.1.S1_at--230--5811Chr10:7823815..7823839 (25 bp)
GACGCGCTCAACTTCACTGCGGGAG
LOC_Os10g15370
OsAffx.8327.1.S1_at--632--1831Chr10:7823816..7823840 (25 bp)
ACGCGCTCAACTTCACTGCGGGAGA
LOC_Os10g15370
OsAffx.8327.1.S1_at--595--4151Chr10:7823817..7823841 (25 bp)
CGCGCTCAACTTCACTGCGGGAGAA
LOC_Os10g15370
OsAffx.8327.1.S1_at--28--4591Chr10:7823818..7823842 (25 bp)
GCGCTCAACTTCACTGCGGGAGAAA
LOC_Os10g15370
OsAffx.8327.1.S1_at--608--4131Chr10:7823819..7823843 (25 bp)
CGCTCAACTTCACTGCGGGAGAAAG
LOC_Os10g15370
OsAffx.8327.1.S1_at--1089--4811Chr10:7823820..7823844 (25 bp)
GCTCAACTTCACTGCGGGAGAAAGA
LOC_Os10g15370
OsAffx.8327.1.S1_at--919--3731Chr10:7823821..7823845 (25 bp)
CTCAACTTCACTGCGGGAGAAAGAA
LOC_Os10g15370
Target Sequence 
TCGGCTCTGAAAATGGGGCTCTGCATGGGCGGGCACTCCGCTGCCACGGCGGGGAACGGCGGACGCGCTCAACTTCACTG
CGGGAGAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis