Browse Element(s) Details


OsAffx.8471.1.S1_at

Description gb:NM_194994.1
DB_XREF= gi:37531347
TID=OsAffx.8471.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0089D15.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0817011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08090OsAffx.22699.1.S1_x_at2/1110+4145100..4147678retrotransposon protein, putative, unclassified
LOC_Os10g08100NANA10+4148504..4150408retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110OsAffx.8473.1.S1_x_at9/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110Os.45173.3.S1_x_at1/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110OsAffx.20877.1.S1_at1/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08120NANA10+4154584..4157339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08130NANA10+4159113..4161963hypothetical protein
LOC_Os10g08140NANA10+4162570..4163472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08150Os.46306.1.S1_x_at2/1110+4164080..4164928transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08160NANA10+4167562..4169119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08170OsAffx.8471.1.S1_x_at11/1110+4170992..4171282hypothetical protein
LOC_Os10g08170OsAffx.8471.1.S1_at11/1110+4170992..4171282hypothetical protein
LOC_Os10g08180Os.45173.1.S1_x_at6/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.8473.1.S1_x_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08180OsAffx.20877.1.S1_at1/1110+4185155..4194427retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8471.1.S1_at--157--1811Chr10:4171134..4171158 (25 bp)
ACCCCATCGTGCTGTTGCCGGGAAA
LOC_Os10g08170
OsAffx.8471.1.S1_at--1081--3531Chr10:4171130..4171154 (25 bp)
CATCGTGCTGTTGCCGGGAAACGGA
LOC_Os10g08170
OsAffx.8471.1.S1_at--48--4191Chr10:4171118..4171142 (25 bp)
GCCGGGAAACGGATGTAGCAAGTTC
LOC_Os10g08170
OsAffx.8471.1.S1_at--631--5531Chr10:4171113..4171137 (25 bp)
GAAACGGATGTAGCAAGTTCGACGC
LOC_Os10g08170
OsAffx.8471.1.S1_at--711--7991Chr10:4171108..4171132 (25 bp)
GGATGTAGCAAGTTCGACGCTGAGC
LOC_Os10g08170
OsAffx.8471.1.S1_at--132--10631Chr10:4171096..4171120 (25 bp)
TTCGACGCTGAGCTCACTAAGCACT
LOC_Os10g08170
OsAffx.8471.1.S1_at--1118--5791Chr10:4171093..4171117 (25 bp)
GACGCTGAGCTCACTAAGCACTACA
LOC_Os10g08170
OsAffx.8471.1.S1_at--635--5911Chr10:4171087..4171111 (25 bp)
GAGCTCACTAAGCACTACAAGCCAT
LOC_Os10g08170
OsAffx.8471.1.S1_at--559--4831Chr10:4171085..4171109 (25 bp)
GCTCACTAAGCACTACAAGCCATCG
LOC_Os10g08170
OsAffx.8471.1.S1_at--68--551Chr10:4171064..4171088 (25 bp)
ATCGCCATGGGCACCGGTGCCACGG
LOC_Os10g08170
OsAffx.8471.1.S1_at--805--4331Chr10:4171060..4171084 (25 bp)
CCATGGGCACCGGTGCCACGGGAAA
LOC_Os10g08170
Target Sequence 
ACCCCATCGTGCTGTTGCCGGGAAACGGATGTAGCAAGTTCGACGCTGAGCTCACTAAGCACTACAAGCCATCGCCATGG
GCACCGGTGCCACGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis